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김학민
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<p><span style="font-family:arial"> </span></p>
<p style="text-align: justify"> <span style="font-size:12px"><strong><u>Education and training</u></strong></span></p>
<p><span style="font-family:arial; font-size:12px"> 2015-present</span><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial"> Ph.D course, UNIST</span></p>
<p><span style="font-family:arial"> 2003-2009 B</span><span style="font-family:arial">.S</span><span style="font-family:arial"> in Bioinformatics, </span><span style="font-family:arial"> Sangmyung University</span></p>
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<p style="text-align: justify"><strong><u><span style="font-family:arial,sans-serif">Professional Experiences</span></u></strong></p>
<p> <span style="font-family:arial; font-size:12px">2011.02-2014.07</span><span style="font-family:arial"> Senior Researcher, </span><span style="font-family:arial,sans-serif; font-size:12px">Personal Genomics Institute, Genome Research Foundation</span><span style="font-family:arial,sans-serif; font-size:12px">, </span><span style="font-family:arial,sans-serif; font-size:12px">Cheongju</span><span style="font-family:arial,sans-serif; font-size:12px">, Korea.</span></p>
<p style="text-align: justify"> <span style="font-family:arial">2014.07-2015.08 </span><span style="font-family:arial; font-size:12px">Researcher</span><span style="font-family:arial">, The Genomics Institute, Ulsan, Korea.</span></p>
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<p style="text-align: justify"><strong><u><span style="font-family:arial,sans-serif">List of Publications</span></u></strong></p> <p style="text-align:justify"> </p> <p style="text-align:justify"><strong>-(co-author)</strong> The draft genome of an octocoral, Dendronephthya gigantea <br />Yeonsu Jeon, Seung Gu Park, Nayun Lee, Jessica A Weber, Hui-Su Kim, Sung-Jin Hwang, Seonock Woo, <strong>Hak-min Kim</strong>, Youngjune Bhak, Sungwon Jeon, Nayoung Lee, Yejin Jo, Asta Blazyte, Taewoo Ryu, Yun Sung Cho, Hyunho Kim, Jung-Hyun Lee, Hyung-Soon Yim, Jong Bhak, and Seungshic Yum <strong><em>Genome Biol Evol.</em> pii:evz043 </strong>(2019).</p> <p style="text-align:justify"> </p> <p style="text-align:justify"><strong>-(co-author)</strong> The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax<br />Hyun Gi Kong, Hyun Ho Kim, Joon-hui Chung, JeHoon Jun, Soohyun Lee, <strong>Hak-Min Kim</strong>, Sungwon Jeon, Seung Gu Park, Jong Bhak, Choong-Min Ryu <strong><em>Cell Rep.</em> 26:2451-2464 </strong>(2019).</p> <p style="text-align:justify"> </p> <p style="text-align:justify"><strong>-(co-author)</strong> KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses<br />Jungeun Kim, Jessica A. Weber, Sungwoong Jho, Jinho Jang, JeHoon Jun, Yun Sung Cho, <strong>Hak-Min Kim</strong>, Hyunho Kim, Yumi Kim, OkSung Chung, Chang Geun Kim, HyeJin Lee, Byung Chul Kim, Kyudong Han, InSong Koh, Kyun Shik Chae, Semin Lee, Jeremy S. Edwards, and Jong Bhak <strong><em>Sci Rep.</em> 8:5677 </strong>(2018).</p> <p style="text-align:justify"> </p> <p><strong>-(co-author)</strong> Myotis rufoniger genome sequence and analyses: M. rufoniger’s genomic feature and the decreasing effective population size of Myotis bats<br />Youngjune Bhak, Yeonsu Jeon, Sungwon Jeon, Oksung Chung, Sungwoong Jho, JeHoon Jun, <strong>Hak-Min Kim</strong>, Yongsoo Cho, Changhan Yoon, Seungwoo Lee, Jung-Hoon Kang, Jong-Deock Lim, Junghwa An, Yun Sung Cho, Doug-Young Ryu, and Jong Bhak <strong><em>PLoS One</em> 12:e0180418 </strong>(2017).</p> <p style="text-align:justify"> </p> <p style="text-align:justify"><strong>-(co-author)</strong> Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago</p> <p>Veronika Siska, Eppie Ruth Jones, Sungwon Jeon, Youngjune Bhak, <strong>Hak-Min Kim</strong>, Yun Sung Cho, Hyunho Kim, Kyusang Lee, Elizaveta Veselovskaya, Tatiana Balueva, Marcos Gallego-Llorente, Michael Hofreiter, Daniel G. Bradley, Anders Eriksson, Ron Pinhasi, Jong Bhak, and Andrea Manica <strong><em>Sci Adv.</em> 3:e1601877 </strong>(2017).</p> <p style="text-align:justify"> </p> <p style="text-align:justify"><strong>-(co-author)</strong> An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes.</p> <p> Yun Sung Cho, Hyunho Kim, <strong>Hak-Min Kim</strong>, Sungwoong Jho, JeHoon Jun, Yong Joo Lee, Kyun Shik Chae, Chang Geun Kim, Sangsoo Kim, Anders Eriksson, Jeremy S. Edwards, Semin Lee, Byung Chul Kim, Andrea Manica, Tae-Kwang Oh, George M. Church, and Jong Bhak <strong><em>Nat commun.</em></strong><strong> 7:13637 </strong>(2016).</p> <p style="text-align:justify"> </p>
<p> <strong>-(co-first author)</strong> Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly.</p>
<p> <strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> The first whole genome and transcriptome of the Cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures.</span></p>
<p style="text-align: justify"> <span style="font-family:arial">Oksung Chung, Seondeok Jin, Yun Sung Cho, Jeongheui Lim, Hyunho Kim, Sungwoong Jho,<strong> Hak-Min Kim</strong>, JeHoon Jun, HyeJin Lee, Alvin Chon, Junsu Ko, Jeremy Edwards, Jessica A. Weber, Kyudong Han, Stephen J. O’Brien, Andrea Manica, Jong Bhak and Woon Kee Paek. <strong><em>Genome Biol.</em></strong><strong> 16:215 </strong>Accepted (2015).</span></p>
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<p style="text-align: justify"><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan.</span></p>
<p style="text-align: justify"> <span style="font-family:arial">Muhammad Ilyas, Jong-Soo Kim, Jesse Cooper, Young-Ah Shin,<strong> Hak-Min Kim</strong>, Yun Sung Cho, Seungwoo Hwang, Hyunho Kim, Jaewoo Moon, Oksung Chung, JeHoon Jun, Achal Rastogi, Sanghoon Song, Junsu Ko, Andrea Manica, Ziaur Rahman, Tayyab Husnain and Jong Bhak. <strong><em>BMC Genomics</em></strong>. 16:172 (2015).</span></p>
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<p style="text-align: justify"><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Whole genome sequence and analysis of the Marwari horse breed and its genetic origin.</span></p>
<p style="text-align: justify"> <span style="font-family:arial">JeHoon Jun, Yun Sung Cho, Haejin Hu, <strong>Hak-Min Kim</strong>, Sungwoong Jho, Priyvrat Gadhvi, Kyung Mi Park, Jeongheui Lim, Woon Kee Paek, Kyudong Han, Andrea Manica, Jeremy S Edwards, Jong Bhak. <strong><em>BMC Genomics</em></strong>. 15(Suppl 9), S4 (2014).</span></p>
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<strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Homozygous deletions at 3p22, 5p14, 6q15, and 9p21 result in aberrant expression of tumor suppressor genes in gastric cancer.</span></p>
<p style="text-align: justify"><span style="font-family:arial">Lee B, Yoon K, Lee S, Kang JM, Kim J, Shim SH, <strong>Kim HM</strong>, Song S, Naka K, Kim AK, Yang HK, Kim SJ. <strong><em>Genes Chromosomes Cancer,.</em> </strong>54, 142-155 (2015)</span></p>
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<p style="text-align: justify"><strong><span style="font-family:arial; font-size:12px">-(co author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Whole-genome analysis of a patient with early-stage small-cell lung cancer. </span></p>
<p style="text-align: justify"><span style="font-family:arial">Han JY, Lee YS, Kim BC, Lee GK, Lee S, Kim EH,</span><strong><span style="font-family:arial"><span style="font-size:medium"> </span></span><span style="font-family:arial; font-size:12px">Kim HM</span></strong><span style="font-family:arial">, Bhak J. <strong><em>Pharmacogenomics J</em>. </strong>14, 503-508 (2014)</span></p>
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<p style="text-align: justify"><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Variation block-based genomics method for crop plants.</span></p>
<p style="text-align: justify"><span style="font-family:arial">Yul Ho Kim, Hyang Mi Park, Tae-Young Hwang, Seuk Ki Lee, Man Soo Choi, Sungwoong Jho, Seungwoo Hwang, <strong>Hak-Min Kim</strong>, Dongwoo Lee, Byoung-Chul Kim, Chang Pyo Hong, Yun Sung Cho, Hyunmin Kim, Kwang Ho Jeong, Min Jung Seo, Hong Tai Yun, Sun Lim Kim, Young-Up Kwon, Wook Han Kim, Hye Kyung Chun, Sang Jong Lim, Young-Ah Shin, Ik-Young Choi, Young Sun Kim, Ho-Sung Yoon, Suk-Ha Lee, Sunghoon Lee. <strong><em>BMC Genomics</em></strong>. 15, 477 (2014).</span></p>
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<p style="text-align: justify"><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Genomic profile analysis of diffuse-type gastric cancers.</span></p>
<p style="text-align: justify"><span style="font-family:arial">Yeon-Su Lee, Yun Sung Cho, Geon Kook Lee, Sunghoon Lee, Young-Woo Kim, Sungwoong Jho, <strong>Hak-Min Kim</strong>, Seung-Hyun Hong, Jung-Ah Hwang, Sook-young Kim, Dongwan Hong, Il Ju Choi, Byung Chul Kim, Byoung-Chul Kim, Chul Hong Kim, Hansol Choi, Youngju Kim, Kyung Wook Kim, Gu Kong, Hyung Lae Kim, Jong Bhak, Seung Hoon Lee, Jin Soo Lee. <strong><em>Genome Biol.</em></strong> 15, R55 (2014).</span></p>
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<p style="text-align: justify"><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Minke whale genome and aquatic adaptation in cetaceans.</span></p>
<p><span style="font-family:arial">Hyung-Soon Yim, Yun Sung Cho, Xuanmin Guang, Sung Gyun Kang, Jae-Yeon Jeong, Sun-Shin Cha, Hyun-Myung Oh, Jae-Hak Lee, Eun Chan Yang, Kae Kyoung Kwon, Yun Jae Kim, Tae Wan Kim, Wonduck Kim, Jeong Ho Jeon, Sang-Jin Kim, Dong Han Choi, Sungwoong Jho, <strong>Hak-Min Kim</strong>, Junsu Ko, Hyunmin Kim, Young-Ah Shin, Hyun-Ju Jung, Yuan Zheng, Zhuo Wang, Yan Chen, Ming Chen, Awei Jiang, Erli Li, Shu Zhang, Haolong Hou, Tae Hyung Kim, Lili Yu, Sha Liu, Kung Ahn, Jesse Cooper, Sin-Gi Park, Chang Pyo Hong, Wook Jin, Heui-Soo Kim, Chankyu Park, Kyooyeol Lee, Sung Chun, Phillip A Morin, Stephen J O’Brien, Hang Lee, Jumpei Kimura, Dae Yeon Moon, Andrea Manica, Jeremy Edwards, Byung Chul Kim, Sangsoo Kim, Jun Wang, Jong Bhak, Hyun Sook Lee, Jung-Hyun Lee. <strong><em>Nat. Genet.</em></strong> 46, 88-92 (2014).</span></p>
<p><strong><span style="font-family:arial; font-size:12px">-(co-first author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Whole genome comparison of donor and cloned dogs.</span></p>
<p style="text-align: justify"><span style="font-family:arial"><strong>Hak-Min Kim</strong>, Yun Sung Cho, Hyunmin Kim, Sungwoong Jho, Bongjun Son, Joung Yoon Choi, Sangsoo Kim, Byeong Chun Lee, Jong Bhak, Goo Jang. <strong><em>Sci</em>. <em>Rep</em>.</strong> 3, 2998 (2013).</span></p>
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<p><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial"> Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers.</span></p>
<p><span style="font-family:arial">Yoon K, Lee S, Han TS, Moon SY, Yun SM, Kong SH, Jho S, Choe J, Yu J, Lee HJ, Park JH, <strong>Kim HM</strong>, Lee SY, Park J, Kim WH, Bhak J, Yang HK, Kim SJ. <strong><em>Genome Research,Res.</em> </strong>23, 1109-1117 (2013)</span></p>
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<p><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial"> Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse.</span></p>
<p><span style="font-family:arial">Kim H, Lee T, Park W, Lee JW, Kim J, Lee BY, Ahn H, Moon S, Cho S, Do KT, Kim HS, Lee HK, Lee CK, Kong HS, Yang YM, Park J, <strong>Kim HM</strong>, Kim BC, Hwang S, Bhak J, Burt D, Park KD, Cho BW, Kim H. <strong><em>DNA Research,Res.</em> </strong>20, 287-298 (2013)</span></p>
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<p><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq.</span></p>
<p><span style="font-family:arial">Park KD, Park J, Ko J, Kim BC, Kim HS, Ahn K, Do KT, Choi H, <strong>Kim HM</strong>, Song S, Lee S, Jho S, Kong HS, Yang YM, Jhun BH, Kim C, Kim TH, Hwang S, Bhak J, Lee HK, Cho BW. <strong><em>BMC Genomics,.</em> </strong>13, 473 (2012)</span></p>
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<p><strong><span style="font-family:arial; font-size:12px">-(co-author)</span></strong><span style="font-family:arial; font-size:12px"> </span><span style="font-family:arial">COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System.</span></p>
<p><span style="font-family:arial">Jho S, Kim BC, Ghang H, Kim JH, Park D, <strong>Kim HM</strong>, Jung SY, Yoo KY, Kim HJ, Lee S, Bhak J.<em> </em><strong><em>BMC Genomics</em>. </strong>10(Suppl 3), S35 (2009)</span></p>
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<p><span style="font-family:arial; font-size:12px">- (발명자) 백색 털 형질에 대한 신규 단일염기변이 마커 (101480207, 대한민국 특허청 등록), 2014</span></p>
<p style="text-align: justify"><span style="font-family:arial; font-size:12px">- (발명자) 저산소증 적응 형질에 대한 신규 단일염기변이 마커 (101480208, 대한민국 특허청 등록), 2014</span></p>
