[http://www.sanger.ac.uk/Users/lh3/seq-nt.html Bioinformatics resources for the next-generation sequencing technology&nbsp;]<br /><br />[http://bioit.dbi.udel.edu/howto/eland Eland(Efficient Local Alignment of Nucleotide Data)]<br /><br />[http://rulai.cshl.edu/rmap/ RMAP: A Program for mapping Solexa reads]<br /><br />[http://compbio.cs.toronto.edu/shrimp/ SHRiMP-SHort Read Mapping Package]<br /><br />[http://maq.sourceforge.net/index.shtml Maq: Mapping and Assembly with Qualities]<br /><br />[http://soap.genomics.org.cn/# SOAP-Short Oligonucleotide Analysis Package]<br /><br />[http://www.sanger.ac.uk/UsersSoftware/analysis/lh3SSAHA2/seq-nt.htmlSSAHA2(Sequence Search and Alignment by Hashing Algorithm)]<br />&nbsp;