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Education

~~ ~~<~~/p>~~ ~~ ~~ <pspan style="font-family:arial,helvetica,sans-serif">08/2009 ~ 02/2014    Kangwon National University, South Korea Ph.D. in Department of Biotechnology~~~~ ~~ ~~ ~~ ~~ ~~Thesis: Multidimensional integratomic approach in understanding genome evolution, expression and function Advisor: Prof. Sun Shim Choi~~ ~~ ~~ ~~~~  <pspan>~~08/2007 ~ 08/2009    Kangwon National University, South Korea Master of Science in Department of Biotechnology~~

~~ ~~Thesis: Multidimensional integratomic approach in understanding genome evolution, expression and function Advisor: Prof. Sun Shim Choi

08/2007 ~ 08/2009    Kangwon National University, South Korea Master of Science in Department of Biotechnology

Thesis: Positive selection signature in the TLR7 family Advisor: Prof. Sun Shim Choi

~~ ~~<~~/p>~~ ~~ ~~ <pspan style="font-family:arial,helvetica,sans-serif">03/2001 ~ 08/2007    Kangwon National University, South Korea

Bachelor of Science in Department of Medical Biotechnology

Postdoctoral Fellowship

04/2014 ~     Postdoctoral Research Associate, Hannelhalli Lab, University of Maryland Institute for Advanced Computer Studies (UMIACS), University of Maryland, College Park

~~ ~~</pspan style="font-family:arial,helvetica,sans-serif"> Mentor: Prof. Sridhar Hannenhalli<p/span>~~ ~~

~~Mentor~~Awards

<pul> <li>09/2008    Outstanding poster in The 17th KOGO Conference. Seoul, Korea</li> <li>11/2008    Outstanding poster in 2008 Korean Society for Bioinformatics and Systems Biology. CheongJu, Korea</li> <li>01/2011   Outstanding poster in Th 9th Asia Pacific Bioinformatics Conference. Inchon,Korea</li> <li>09/2011    Outstanding poster in The 20Th KOGO Conference. Osong, Korea</li> <li>11/2014    Excellent Paper Award in Korean Society for Bioinformatics and Systems Biology</li></pul>

~~ ~~Patents

<pul> <li>Massive Data Merging Compression Apparatus and Method based on Gene Sequence using Binary Notation, Seung Gu Park and Sun Shim Choi, Korea Patent 1015823910000</li> <li>Display Apparatus and Method for DNA Sequence and Comments Information, Seung Gu Park and Sun Shim Cho, Korea Patent 1013764190000 </li> <li>Antibody Structure Sequence Numbering Apparatus and Method based on Next Generation Sequencing Data, Seung Gu Park and Sun Shim Choi, Korea Patent 10-2013-0167798</li> <li>Coding Apparatus and Method for DNA Sequence, Seung Gu Park and Sun Shim Choi, Korea Patent, 10-2012-0045886 </pspan></li> <li>Display Apparatus and Method for DNA Sequence and Structure Information, Seung Gu Park and Sun Shim Choi, Korea Patent 10-2012-0045888</li></ul>

<~~strong~~span style="font-family:arial,helvetica,sans-serif">~~Awards~~Publications<~~br />•    09/2008    Outstanding poster in The 17th KOGO Conference. Seoul, Korea<br~~ /strong>~~•    11/2008    Outstanding poster in 2008 Korean Society for Bioinformatics and Systems Biology. CheongJu, Korea~~ ~~•    01/2011    Outstanding poster in Th 9th Asia Pacific Bioinformatics Conference. Inchon,Korea •    09/2011    Outstanding poster in The 20Th KOGO Conference. Osong, Korea •    11/2014    Excellent Paper Award in Korean Society for Bioinformatics and Systems Biology~~

<pul> <li>Bhak, Y., Jeong, H.-o., Cho, Y. S., Jeon, S., Cho, J., Gim, J.-A., . . . Kim, H.-M. (2019). Depression and suicide risk prediction models using blood-derived multi-omics data. Translational psychiatry, 9(1), 1-8.~~ ~~</pli> <li><pspan style="font-size:11px">Cho, H., Han, S., Choe, J., Park, S. G., Choi, S. S., &~~nbsp~~amp;Kim, Y. K. (2012). SMG5–PNRC2 is functionally dominant compared with SMG5–SMG7 in mammalian nonsense-mediated mRNA decay. Nucleic acids research, 41(2), 1319-1328.</pspan></li> <li><pspan style="font-size:11px">Cho, H., Kim, K. M., Han, S., Choe, J., Park, S. G., Choi, S. S., &~~nbsp~~amp;Kim, Y. K. (2012). Staufen1-mediated mRNA decay functions in adipogenesis. Molecular cell, 46</pem>(4), 495-506.</li> <li>Cho, Y. S., Jun, J., Kim, J. A., Kim, H.-M., Chung, O., Kang, S.-G., . . . Kim, H.-J. (2019). Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles. BioRxiv, 598821.</li> <li>Jeon, Y., Park, S. G., Lee, N., Weber, J. A., Kim, H.-S., Hwang, S.-J., . . . Jeon, S. (2019). The draft genome of an octocoral, Dendronephthya gigantea. <pem>Genome biology and evolution, 11(3), 949-953.~~ ~~</pli> <li>Kim, H.-M., Weber, J. A., Lee, N., Park, S. G., Cho, Y. S., Bhak, Y., . . . Luria, V. (2018). The jellyfish genome sheds light on the early evolution of active predation. <pem>BioRxiv<~~strong~~/em>~~Patents~~, 449082.</~~strong~~span> </li> <li>Kim, H.-M., Weber, J. A., Lee, N., Park, S. G., Cho, Y. S., Bhak, Y., . . . Luria, V. (2019). The genome of the giant Nomura&~~bull;&nbsp~~rsquo;~~   Massive Data Merging Compression Apparatus and Method based~~ s jellyfish sheds light on ~~Gene Sequence using Binary Notation~~the early evolution of active predation. BMC biology, ~~Seung Gu Park and Sun Shim Choi~~17(1), ~~Korea Patent 1015823910000~~28. </li>~~•    Display Apparatus and Method for DNA Sequence and Comments Information~~ <li>Kim, S., Park, I., ~~Seung Gu~~ Park ~~and Sun Shim~~ , S. G., Cho, ~~Korea Patent 1013764190000~~S., Kim, J. H., Ipper, N. S., . . . Hong, H. J. (2017). Generation, Diversity Determination, and Application to Antibody Selection of a Human Na&~~nbsp~~iuml;ve Fab Library. Molecules and cells, 40(9), 655.</li> <li>Kong, H. G., Kim, H. H., Chung, J.-h., Jun, J., Lee, S., Kim, H.-M., . . . Ryu, C.-M. (2019). The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax. Cell reports, 26 (9), 2451-2464. e2455.</li>~~•    Antibody Structure Sequence Numbering Apparatus and Method based on Next Generation Sequencing Data~~ <li>Kwon, M. S., Lee, J. J., Min, J., Hwang, K., ~~Seung Gu~~ Park ~~and Sun Shim Choi~~, ~~Korea Patent~~ S. G., Kim, E. H., . . . Lee, H. (2019). Brca2 abrogation engages with the alternative lengthening of telomeres via break‐induced replication. The FEBS journal, 286(10), 1841-1858.</li> <li>Lee, J. S., Das, A., Jerby-Arnon, L., Arafeh, R., Auslander, N., Davidson, M., . . . Park, S. G. (2018). Harnessing synthetic lethality to predict the response to cancer treatment. Nature communications, 9(1), 2546.</li> <li>Malin, J., Ezer, D., Ma, X., Mount, S., Karathia, H., Park, S. G., . . . Hannenhalli, S. (2015). Crowdsourcing: Spatial clustering of low-~~0167798~~affinity binding sites amplifies in vivo transcription factor occupancy. BioRxiv , 024398.</li> <li>Mok, Y.-J., Park, S. G., &~~bull~~amp;~~    Coding Apparatus~~ Choi, S. S. (2012). Comparative analysis of the structural and ~~Method for DNA Sequence~~expressional parameters of microRNA target genes. Gene, 497(1), 103-109.</li> <li>Nair, N. U., Das, A., Amit, U., Robinson, W., ~~Seung Gu~~ Park ~~and Sun Shim Choi~~, ~~Korea Patent~~S. G., Basu, M., . . . Hannenhalli, S. (2018). Putative functional genes in idiopathic dilated cardiomyopathy. Scientific reports, 8(1), 66.</li> <li>Park, D., Park, J., Park, S. G., Park, T., &~~nbsp~~amp;Choi, S. S. (2008). Analysis of human disease genes in the context of gene essentiality. Genomics, 92(6), 414-418. </li> <li>Park, S. G., &~~bull~~amp;Choi, S. S. (2010). Expression breadth and expression abundance behave differently in correlations with evolutionary rates. BMC evolutionary biology, 10(1), 241.</li> <li>Park, S. G., &~~nbsp~~amp;Hannenhalli, S. (2015). First intron length in mammals is associated with 5&~~nbsp~~prime; exon skipping rate. BioRxiv, 024463.</li> <li>Park, S. G., Hannenhalli, S., &~~nbsp~~amp;~~Display Apparatus~~ Choi, S. S. (2014). Conservation in first introns is positively associated with the number of exons within genes and ~~Method for DNA Sequence and Structure Information~~the presence of regulatory epigenetic signals. BMC genomics, 15(1), 526.</li> <li>Park ~~and Sun Shim~~ , S. G., Kwon, K.-H., & Choi, ~~Korea Patent 10~~S. S. (2012). Analysis of putative miRNA function using a novel approach, GAPPS-~~2012~~miRTar GE. Genes & Genomics, 34(2), 205-~~0045888~~216.</pspan></li> <li>Park, S. G., Luria, V., Weber, J. A., Jeon, S., Kim, H.-M., Jeon, Y., . . . Hong, W. H. (2018). The whale shark genome reveals how genomic and physiological properties scale with body size. BioRxiv, 443036.</li> <pli>Park, S. G., Park, D., Jung, Y.-J., Chung, E., & Choi, S. S. (2010). Positive selection signatures in the TLR7 family. Genes &~~nbsp~~amp;Genomics, 32</pem>(2), 143-150.</li> <li>Sahu, A. D., Lee, J. S., Wang, Z., Zhang, G., Iglesias‐Bartolome, R., Tian, T., . . . Ponomarova, O. (2019). Genome‐wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy. Molecular systems biology, 15<p/em>~~ ~~(3).</pspan> <p/span>~~ ~~</pli> <li>Shin, E.-S., Chung, J.-H., Gu Park, S., Saleh, A., Lam, Y.-Y., Bhak, J., . . . Brachmann, J. (2019). Comparison of exercise electrocardiography and magnetocardiography for detection of coronary artery disease using ST-segment fluctuation score. Clinical hemorheology and microcirculation<p/em>~~ ~~(Preprint), 1-10.</pspan> <p/span>~~ ~~</pli> <li>Shin, E.-S., Park, S. G., Saleh, A., Lam, Y.-Y., Bhak, J., Jung, F., . . . Brachmann, J. (2018). Magnetocardiography scoring system to predict the presence of obstructive coronary artery disease. Clinical hemorheology and microcirculation<p/em>(Preprint), 1-9.<~~strong~~/span>~~Publications~~</~~strong~~span></pli> <li>Yang, H., Ko, H.-J., Yang, J.-Y., Kim, J.-J., Seo, S.-U., Park, S. G., . . . Kweon, M.-N. (2012). Interleukin-1 promotes coagulation, which is necessary for protective immunity in the lung against Streptococcus pneumoniae infection. The Journal of infectious diseases, 207(1), 50-60.<p/span>~~ ~~</pspan> <p/li>~~ ~~</pul>

~~•    Nishanth, U. N., Avinas D., Uri, A., PARK, S. G., ... HANNENHALLI, S. (2016). Driver genes in Idiopathic Dilated Cardiomyopathy. Nat Communications (In press)~~<~~br /~~!--[if supportFields]>~~•    MALIN, J., EZER, D., MA, X., MOUNT, S~~<span lang=EN-US style='font-size:10.~~, KARATHIA, H., PARK, S. G., &hellip~~0pt; ~~HANNENHALLI, S. (2016). Crowdsourcing~~mso-bidi-font-size: ~~Spatial clustering of low-affinity binding sites amplifies in vivo transcription factor occupancy~~11. ~~Nat Communications (In press) &bull~~0pt;~~&nbsp~~line-height:107%;~~&nbsp~~font-family:"맑은 고딕";~~&nbsp~~mso-ascii-theme-font:minor-latin;~~ PARK, S. G., HANNENHALLI, S. (2015). First intron length in mammals is associated with 5' exon skipping rate. (Unpublished Preprints at BioRxiv) &bull~~mso-fareast-theme-font:minor-fareast;~~    PARK, S. G., HANNENHALLI, S., &amp~~mso-hansi-theme-font:minor-latin; ~~CHOI, S. S. (2014). Conservation in first introns is positively associated with the number of exons within genes and the presence of regulatory epigenetic signals. BMC genomics, 15(1), 1. •    PARK, S.G., PARK, D., JUNG, Y., CHUNG, E. and CHOI, S.S., 2010. Positive selection signatures in the TLR7~~ mso-bidi-font-family~~. Genes &amp~~:"Times New Roman"; ~~Genomics, 32(2), pp. 143~~mso-bidi-theme-font:minor-~~150. •   &nbsp~~bidi;~~PARK, S.G. and CHOI, S.S., 2010. Expression breadth and expression abundance behave differently in correlations with evolutionary rates. BMC evolutionary biology, 10(1), pp. 241. &bull~~mso-ansi-language:EN-US;~~   &nbsp~~mso-fareast-language:KO;~~PARK, S.G., KWON, K. and CHOI, S.S., 2012. Analysis of putative miRNA function using a novel approach, GAPPS~~mso-~~miRTarGE. Genes & Genomics, 34(2), pp. 205~~bidi-~~216. •    PARK, D., PARK, J., PARK, S.G., PARK, T. and CHOI, S.S., 2008. Analysis of human disease genes in the context of gene essentiality. Genomics, 92(6), pp. 414~~language:AR-~~418. ~~•    MOK, Y., PARK, S.G. and CHOI, S.S., 2012. Comparative analysis of the structural and expressional parameters of microRNA target genes. Gene, 497(1), pp. 103-109.~~<~~br />~~span~~•    CHO, H., KIM, K.M., HAN, S., CHOE, J., PARK, S.G., CHOI, S.S. and KIM, Y.K., 2012. Staufen1~~style='mso-~~mediated mRNA decay functions in adipogenesis. Molecular cell, 46(4), pp. 495~~element:field-~~506.~~end'> •    CHO, H., HAN, S., CHOE, J., PARK, S.G., CHOI, S.S. and KIM, Y.K., 2013. SMG5–PNRC2 is functionally dominant compared with SMG5–SMG7 in mammalian nonsense-mediated mRNA decay. Nucleic acids research, 41(2), pp. 1319-1328. ~~•    YANG, H., KO, H., YANG, J., KIM, J., SEO, S., PARK, S.G., CHOI, S.S., SEONG, J.K. and KWEON, M., 2013. Interleukin~~<![endif]-~~1 Promotes Coagulation, Which Is Necessary for Protective Immunity in the Lung Against Streptococcus pneumoniae Infection. Journal of Infectious Diseases, 207(1), pp. 50~~-~~60.>

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