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<p>145)<a href="https://academic.oup.com/gigascience/article/8/12/giz125/5651108">Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information</a> Hui-su Kim, Sungwon-Jeon, Changae Kim, Yeon&nbsp;Kyunh Kim,... <emstrong>GigaScience2020</emstrong>, Volume 8, Issue 12, December 2019</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/32076829&nbsp;Decoding a highly mixed Kazakh genome. Seidualy, M., Blazyte, A., Jeon, S., Bhak, Y., Jeon Y., Kim, J., . . . Bhak, J.(2020)&nbsp;Hum Genet.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/31940721 Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity. Lee, H., Kim, J., Weber, J. A., Chung, O., Cho, Y. S., Jho, S., . . . Bhak, J. (2020). Mol Cells.]</li></pul>
<p>144) <a href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1793-1?utm_source=other_website&amp;utm_medium=cpm&amp;utm_content=leaderboard&amp;utm_campaign=BSCN_2_DD_X-molfeed"strong>Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles2019</astrong>&nbsp;Jin-ho Jang, Seung Gu Park, Yun Sung cho,..., BMC Genome Biology, 20:&nbsp;181, 2019</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/30811824 Brca2 abrogation engages with the alternative lengthening of telomeres via break-induced replication. Kwon, M. S., Lee, J. J., Min, J., Hwang, K., Park, S. G., Kim, E. H., . . . Lee, H. (2019). FEBS J, 286(10), 1841-1858.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/31794015 Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information. Kim, H. S., Jeon, S., Kim, C., Kim, Y. K., Cho, Y. S., Kim, J., . . . Bhak, J. (2019). Gigascience, 8(12).]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/31810925 Combinatory Analysis of Cell-free and Circulating Tumor Cell DNAs Provides More Variants for Cancer Treatment. Lee, S. Y., Chae, D. K., An, J., Yoo, S., Jung, S., Chae, C. H., . . . Cho, D. H. (2019). Anticancer Res, 39(12), 6595-6602.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/30775972 Comparison of exercise electrocardiography and magnetocardiography for detection of coronary artery disease using ST-segment fluctuation score. Shin, E. S., Chung, J. H., Park, S. G., Saleh, A., Lam, Y. Y., Bhak, J., . . . Brachmann, J. (2019). Clin Hemorheol Microcirc, 73(2), 283-291.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/31624227 Depression and suicide risk prediction models using blood-derived multi-omics data. Bhak, Y., Jeong, H. O., Cho, Y. S., Jeon, S., Cho, J., Gim, J. A., . . . Lee, S. (2019). Transl Psychiatry, 9(1), 262.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/30825304 The Draft Genome of an Octocoral, Dendronephthya gigantea. Jeon, Y., Park, S. G., Lee, N., Weber, J. A., Kim, H. S., Hwang, S. J., . . . Yum, S. (2019). Genome Biol Evol, 11(3), 949-953.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/30811993 The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax. Kong, H. G., Kim, H. H., Chung, J. H., Jun, J., Lee, S., Kim, H. M., . . . Ryu, C. M. (2019). Cell Rep, 26(9), 2451-2464 e2455.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/30925871 The genome of the giant Nomura&nbsp#39;s jellyfish sheds light on the early evolution of active predation. Kim, H. M., Weber, J. A., Lee, N., Park, S. G., Cho, Y. S., Bhak, Y., . . . Yum, S. (2019). BMC Biol, 17(1), 28.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/30535859 Investigation of Hanwoo-specific structural variations using whole-genome sequencing data. Park, J., Shin, W., Mun, S., Oh, M. H., Lim, D., Oh, D. Y., . . . Han, K. (2019). Genes Genomics, 41(2), 233-240.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/31464627 Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles. Cho, Y. S., Jun, J. H., Kim, J. A., Kim, H. M., Chung, O., Kang, S. G., . . . Bhak, J. (2019). Genome Biology, 20(1), 181.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/29432975 Sequencing and analysis of the whole genome of Indian Gujarati male. Almal, S., Jeon, S., Agarwal, M., Patel, S., Patel, S., Bhak, Y., . . . Padh, H. (2019). Genomics, 111(2), 196-204.]</li></pul>
<p>143) The genome of the giant Nomura&rsquo;s jellyfish sheds light on the early evolution of active predation, Hak-Min&nbsp;Kim, Jessica&nbsp;A.&nbsp;Weber, Nayoung&nbsp;Lee,..., BMC Biology 17:28, 2019<strong>2018</strong></p>
<pul>&nbsp; <li>[https://www.ncbi.nlm.nih.gov/pubmed/29644394 Genomic analysis reveals secondary glioblastoma after radiotherapy in a subset of recurrent medulloblastomas. Phi, J. H., Park, A. K., Lee, S., Choi, S. A., Baek, I. P., Kim, P., . . . Kim, S. K. (2018). Acta Neuropathol, 135(6), 939-953.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/29383489 Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia. Yew, C. W., Lu, D., Deng, L., Wong, L. P., Ong, R. T., Lu, Y., . . . Hoh, B. P. (2018). Hum Genet, 137(2), 161-173.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/30475813 Grading system for periodontitis by analyzing levels of periodontal pathogens in saliva. Kim, E. H., Joo, J. Y., Lee, Y. J., Koh, J. K., Choi, J. H., Shin, Y., . . . Lee, J. Y. (2018). PLoS One, 13(11), e0200900.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/29618732 KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses. Kim, J., Weber, J. A., Jho, S., Jang, J., Jun, J., Cho, Y. S., . . . Bhak, J. (2018). Sci Rep, 8(1), 5677.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/30320564 Magnetocardiography scoring system to predict the presence of obstructive coronary artery disease. Shin, E. S., Park, S. G., Saleh, A., Lam, Y. Y., Bhak, J., Jung, F., . . . Brachmann, J. (2018). Clin Hemorheol Microcirc, 70(4), 365-373.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/29775755 Whole genome sequencing and bioinformatics analysis of two Egyptian genomes. ElHefnawi, M., Jeon, S., Bhak, Y., ElFiky, A., Horaiz, A., Jun, J., . . . Bhak, J. (2018). Gene, 668, 129-134.]</li></pul>
<p>142) <a href="https://www.nature.com/articles/s41598-018-23837-x"><span style="font-size:12px">KoVariome: Korean National Standard Reference Variome </span></a><span style="font-size:12px"><a href="https://www.nature.com/articles/s41598-018-23837-x">database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses</astrong> Jungeun Kim, Jessica A. Weber, Sungwoong Jho,... Scientific Reports 8:5677, 20182017</spanstrong></p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/28074842 Analysis of the FGF gene family provides insights into aquatic adaptation in cetaceans. Nam, K., Lee, K. W., Chung, O., Yim, H. S., Cha, S. S., Lee, S. W., . . . Jeong, J. Y. (2017). Sci Rep, 7, 40233.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/28991236 Corrigendum: An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Cho, Y. S., Kim, H., Kim, H. M., Jho, S., Jun, J., Lee, Y. J., . . . Bhak, J. (2017). Nat Commun, 8, 16168.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/28164156 Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago. Siska, V., Jones, E. R., Jeon, S., Bhak, Y., Kim, H. M., Cho, Y. S., . . . Manica, A. (2017). Sci Adv, 3(2), e1601877.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/28678835 Myotis rufoniger genome sequence and analyses: M. rufoniger&#39;s genomic feature and the decreasing effective population size of Myotis bats. Bhak, Y., Jeon, Y., Jeon, S., Chung, O., Jho, S., Jun, J., . . . Bhak, J. (2017). PLoS One, 12(7), e0180418.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/28042784 Perspectives provided by leopard and other cat genomes: how diet determined the evolutionary history of carnivores, omnivores, and herbivores. Kim, S., Cho, Y. S., Bhak, J., O&#39;Brian, S. J., &nbspamp;Yeo, J. H. (2017). BMB Rep, 50(1), 3-4.]</li></pul>
<p>141) &nbsp;<span style="font-size:12px"strong>2016<a href="http://scholar.google.co.kr/scholar_url?url=https://link.springer.com/article/10.1007/s00439-018-1869-0&amp;hl=en&amp;sa=X&amp;scisig=AAGBfm2DXRwTFF2717VMZ8OHX6rNL4XMzA&amp;nossl=1&amp;oi=scholaralrt" target="_blank">Genomic structure of the native inhabitants of&nbsp;Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia</a>&nbsp;CW Yew, D Lu, L Deng, L-P Wong, RT Ong, Y Lu, X Wang, Y Yushimah, ... Human Genetics 439, 1-13, 2018</spanstrong></p>
<pul>&nbsp; <li>[https://www.ncbi.nlm.nih.gov/pubmed/27716407 An adaptive detection method for fetal chromosomal aneuploidy using cell-free DNA from 447 Korean women. Kim, S., Jung, H., Han, S. H., Lee, S., Kwon, J., Kim, M. G., . . . Bhak, J. (2016). Bmc Medical Genomics, 9(1), 61.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/27802837 Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly. Kim, S., Cho, Y. S., Kim, H. M., Chung, O., Kim, H., Jho, S., . . . Yeo, J. H. (2016). Genome Biology, 17(1), 211.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/27129388 Comparison of two high-throughput semiconductor chip sequencing platforms in noninvasive prenatal testing for Down syndrome in early pregnancy. Kim, S., Jung, H., Han, S. H., Lee, S., Kwon, J., Kim, M. G., . . . Bhak, J. (2016). Bmc Medical Genomics, 9(1), 22.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/27882922 An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Cho, Y. S., Kim, H., Kim, H. M., Jho, S., Jun, J., Lee, Y. J., . . . Bhak, J. (2016). Nat Commun, 7, 13637.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/27502179 The genetics of an early Neolithic pastoralist from the Zagros, Iran. Gallego-Llorente, M., Connell, S., Jones, E. R., Merrett, D. C., Jeon, Y., Eriksson, A., . . . Pinhasi, R. (2016). Sci Rep, 6, 31326.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/28004835 Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle. Aranda, M., Li, Y., Liew, Y. J., Baumgarten, S., Simakov, O., Wilson, M. C., . . . Voolstra, C. R. (2016). Sci Rep, 6, 39734.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/27153548 RNA-Seq analysis reveals new evidence for inflammation-related changes in aged kidney. Park, D., Kim, B. C., Kim, C. H., Choi, Y. J., Jeong, H. O., Kim, M. E., . . . Chung, H. Y. (2016). Oncotarget, 7(21), 30037-30048.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/27561685 Short-term calorie restriction ameliorates genomewide, age-related alterations in DNA methylation. Kim, C. H., Lee, E. K., Choi, Y. J., An, H. J., Jeong, H. O., Park, D., . . . Chung, H. Y. (2016). Aging Cell, 15(6), 1074-1081.]</li></pul>
<p>140) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:bbjcffOLshcC"strong>Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago2015</astrong>&nbsp; V Siska, ER Jones, S Jeon, Y Bhak, HM Kim, YS Cho, H Kim, K Lee, ... Science Advances 3 (2), e1601877, 2017</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/26449472 Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent. Gallego Llorente, M., Jones, E. R., Eriksson, A., Siska, V., Arthur, K. W., Arthur, J. W., . . . Manica, A. (2015). Science, 350(6262), 820-822.]</li> <li>[https://link.springer.com/article/10.1007/s13258-015-0353-7 Characterization of cetacean Numt and its application into cetacean phylogeny. Ko, Y. J., Yang, E. C., Lee, J. H., Lee, K. W., Jeong, J. Y., Park, K., . . . Yim, H. S. (2015). Genes &nbspamp;Genomics, 37(12), 1061-1071.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/26486310 The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures. Chung, O., Jin, S., Cho, Y. S., Lim, J., Kim, H., Jho, S., . . . Paek, W. K. (2015). Genome Biology, 16, 215.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25666347 Genome-wide analysis of DNA methylation before-and after exercise in the thoroughbred horse with MeDIP-Seq. Gim, J. A., Hong, C. P., Kim, D. S., Moon, J. W., Choi, Y., Eo, J., . . . Kim, H. S. (2015). Mol Cells, 38(3), 210-220.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/26653294 Genomic legacy of the African cheetah, Acinonyx jubatus. Dobrynin, P., Liu, S., Tamazian, G., Xiong, Z., Yurchenko, A. A., Krasheninnikova, K., . . . O&#39;Brien, S. J. (2015). Genome Biology, 16, 277.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25637569 HEpD: A database describing epigenetic differences between Thoroughbred and Jeju horses. Gim, J. A., Lee, S., Kim, D. S., Jeong, K. S., Hong, C. P., Bae, J. H., . . . Kim, H. S. (2015a). Gene, 560(1), 83-88.]</li> <li>[https://link.springer.com/article/10.1007/s13258-014-0251-4 HExDB: a database for epigenetic changes occurring after horse exercise. Gim, J. A., Lee, S., Kim, D. S., Jeong, K. S., Hong, C. P., Bae, J. H., . . . Kim, H. S. (2015b). Genes &amp; Genomics, 37(3), 287-294.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25565328 Insights into the Evolution of Longevity from the Bowhead Whale Genome. Keane, M., Semeiks, J., Webb, A. E., Li, Y. I., Quesada, V., Craig, T., . . . de Magalhaes, J. P. (2015). Cell reports, 10(1), 112-122.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25983541 Profiling age-related epigenetic markers of stomach adenocarcinoma in young and old subjects. Kim, B. C., Jeong, H. O., Park, D., Kim, C. H., Lee, E. K., Kim, D. H., . . . Chung, H. Y. (2015). Cancer Inform, 14, 47-54.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25965825 SLC15A2 genomic variation is associated with the extraordinary response of sorafenib treatment: whole-genome analysis in patients with hepatocellular carcinoma. Lee, Y. S., Kim, B. H., Kim, B. C., Shin, A., Kim, J. S., Hong, S. H., . . . Park, J. W. (2015). Oncotarget, 6(18), 16449-16460.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25887915 Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan. Ilyas, M., Kim, J. S., Cooper, J., Shin, Y. A., Kim, H. M., Cho, Y. S., . . . Bhak, J. (2015). BMC genomics, 16, 172.]</li></pul>
<p>139) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:ZqLB7dQ1iF4C"strong>Analysis of the FGF gene family provides insights into aquatic adaptation in cetaceans2014</astrong>&nbsp; K Nam, KW Lee, O Chung, HS Yim, SS Cha, SW Lee, JH Jun, YS Cho, ... Scientific Reports 7, 40233, 2017</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25329639 The feasibility study of non-invasive fetal trisomy 18 and 21 detection with semiconductor sequencing platform. Jeon, Y. J., Zhou, Y., Li, Y., Guo, Q., Chen, J., Quan, S., . . . Bhak, J. (2014). PLoS One, 9(10), e110240.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25027854 Genome-wide analysis of DNA methylation patterns in horse. Lee, J. R., Hong, C. P., Moon, J. W., Jung, Y. D., Kim, D. S., Kim, T. H., . . . Kim, H. S. (2014). BMC genomics, 15, 598.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/24690483 Genomic profile analysis of diffuse-type gastric cancers. Lee, Y. S., Cho, Y. S., Lee, G. K., Lee, S., Kim, Y. W., Jho, S., . . . Lee, J. S. (2014). Genome Biology, 15(4).]</li> <li>[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093662 Identification and Characterization of MicroRNAs in Normal Equine Tissues by Next Generation Sequencing. Kim, M. C., Lee, S. W., Ryu, D. Y., Cui, F. J., Bhak, J., &nbspamp;Kim, Y. (2014). PLoS One, 9(4).]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/24270359 Minke whale genome and aquatic adaptation in cetaceans. Yim, H. S., Cho, Y. S., Guang, X., Kang, S. G., Jeong, J. Y., Cha, S. S., . . . Lee, J. H. (2014). Nature Genetics, 46(1), 88-92.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25031567 New lung cancer panel for high-throughput targeted resequencing. Kim, E. H., Lee, S., Park, J., Lee, K., Bhak, J., &amp; Kim, B. C. (2014). Genomics Inform, 12(2), 50-57.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/24276243 PPP1R1B-STARD3 chimeric fusion transcript in human gastric cancer promotes tumorigenesis through activation of PI3K/AKT signaling. Yun, S. M., Yoon, K., Lee, S., Kim, E., Kong, S. H., Choe, J., . . . Kim, S. J. (2014). Oncogene, 33(46), 5341-5347.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/24709692 Whole-genome analysis of a patient with early-stage small-cell lung cancer. Han, J. Y., Lee, Y. S., Kim, B. C., Lee, G. K., Lee, S., Kim, E. H., . . . Bhak, J. (2014). Pharmacogenomics J, 14(6), 503-508.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/25521865 Whole genome sequence and analysis of the Marwari horse breed and its genetic origin. Jun, J., Cho, Y. S., Hu, H., Kim, H. M., Jho, S., Gadhvi, P., . . . Bhak, J. (2014). BMC genomics, 15.]</li></pul>
<p>138) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:qbqt7gslDFUC"strong>Myotis rufoniger Genome Sequence And Analyses: M. rufoniger9s Genomic Feature And The Decreasing Effective Population Size Of Myotis Bats2013</astrong>&nbsp; Y Bhak, Y Jeon, S Jeon, O Chung, J Sungwoong, JH Jun, HM Kim, Y Cho, ...&nbsp;bioRxiv, 131904, 2017</p>
<pul>&nbsp; <li>[https://www.ncbi.nlm.nih.gov/pubmed/23737375 Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers. Yoon, K., Lee, S., Han, T. S., Moon, S. Y., Yun, S. M., Kong, S. H., . . . Kim, S. J. (2013). Genome Research, 23(7), 1109-1117.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/23707431 The genetic basis of white tigers. Xu, X., Dong, G. X., Hu, X. S., Miao, L., Zhang, X. L., Zhang, D. L., . . . Luo, S. J. (2013). Current Biology, 23(11), 1031-1035.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/23742982 iAnn: an event sharing platform for the life sciences. Jimenez, R. C., Albar, J. P., Bhak, J., Blatter, M. C., Blicher, T., Brazas, M. D., . . . Corpas, M. (2013). Bioinformatics, 29(15), 1919-1921.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/23580538 Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse. Kim, H., Lee, T., Park, W., Lee, J. W., Kim, J., Lee, B. Y., . . . Kim, H. (2013). DNA Res, 20(3), 287-298.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/24045858 The tiger genome and comparative analysis with lion and snow leopard genomes. Cho, Y. S., Hu, L., Hou, H., Lee, H., Xu, J., Kwon, S., . . . Bhak, J. (2013). Nat Commun, 4, 2433.]</li> <li>[https://www.nature.com/articles/srep02998 Whole genome comparison of donor and cloned dogs. Kim, H. M., Cho, Y. S., Kim, H., Jho, S., Son, B., Choi, J. Y., . . . Jang, G. (2013). Scientific reports, 3.]</li></pul>
<p>137) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:k8to_Y4Q4_EC"strong>Perspectives provided by leopard and other cat genomes: how diet determined the evolutionary history of carnivores, omnivores, and herbivores2012</astrong>&nbsp; S Kim, YS Cho, J Bhak, SJ O&rsquo;Brian, JH Yeo&nbsp; BMB reports 50 (1), 3, 2017</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/22580955 De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis. Hyun, T. K., Rim, Y., Jang, H. J., Kim, C. H., Park, J., Kumar, R., . . . Kim, J. Y. (2012). Plant Mol Biol, 79(4-5), 413-427.]</li> <li>[https://www.pnas.org/content/109/12/4574.short Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Xu, S. H., Pugach, I., Stoneking, M., Kayser, M., Jin, L., &nbspamp;Consortium, H. P.-A. S. (2012). Proceedings of the National Academy of Sciences of the United States of America, 109(12), 4574-4579.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/24627758 Low budget analysis of Direct-To-Consumer genomic testing familial data. Glusman, G., Cariaso, M., Jimenez, R., Swan, D., Greshake, B., Bhak, J., . . . Corpas, M. (2012). F1000Res, 1, 3.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/22139927 MetaBase--the wiki-database of biological databases. Bolser, D. M., Chibon, P. Y., Palopoli, N., Gong, S., Jacob, D., Del Angel, V. D., . . . Bhak, J. (2012). Nucleic Acids Res, 40(Database issue), D1250-1254.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/22797899 A public resource facilitating clinical use of genomes. Ball, M. P., Thakuria, J. V., Zaranek, A. W., Clegg, T., Rosenbaum, A. M., Wu, X. D., . . . Church, G. M. (2012). Proceedings of the National Academy of Sciences of the United States of America, 109(30), 11920-11927.]</li> <li>[https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-13-473 Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq. Park, K. D., Park, J., Ko, J., Kim, B. C., Kim, H. S., Ahn, K., . . . Cho, B. W. (2012). BMC genomics, 13.]</li></pul>
<p>136) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:yKzB5RS27GgC"strong>Short‐term calorie restriction ameliorates genomewide, age‐related alterations in DNA methylation2011</astrong>&nbsp; CH Kim, EK Lee, YJ Choi, HJ An, HO Jeong, D Park, BC Kim, BP Yu, ... Aging Cell 15 (6), 1074-1081, 2016</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/21696235 BetaDock: shape-priority docking method based on beta-complex. Kim, D. S., Kim, C. M., Won, C. I., Kim, J. K., Ryu, J., Cho, Y., . . . Bhak, J. (2011). J Biomol Struct Dyn, 29(1), 219-242.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/21765942 Gene expression pattern in transmitochondrial cytoplasmic hybrid cells harboring type 2 diabetes-associated mitochondrial DNA haplogroups. Hwang, S., Kwak, S. H., Bhak, J., Kang, H. S., Lee, Y. R., Koo, B. K., . . . Cho, Y. M. (2011). PLoS One, 6(7), e22116.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/22242128 Identification of close relatives in the HUGO Pan-Asian SNP database. Yang, X., Xu, S., Consortium, H. P.-A. S., &nbspamp;Indian Genome Variation, C. (2011). PLoS One, 6(12), e29502.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/22369201 Liverome: a curated database of liver cancer-related gene signatures with self-contained context information. Lee, L., Wang, K., Li, G., Xie, Z., Wang, Y., Xu, J., . . . Hwang, S. (2011). BMC genomics, 12 Suppl 3, S3.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/21334307 Mutational hotspots in the mitochondrial genome of lung cancer. Choi, S. J., Kim, S. H., Kang, H. Y., Lee, J., Bhak, J. H., Sohn, I., . . . Kim, J. (2011). Biochem Biophys Res Commun, 407(1), 23-27.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/21731755 PanSNPdb: the Pan-Asian SNP genotyping database. Ngamphiw, C., Assawamakin, A., Xu, S., Shaw, P. J., Yang, J. O., Ghang, H., . . . Consortium, H. P.-A. S. (2011). PLoS One, 6(6), e21451.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/21483678 Population genetic structure of peninsular Malaysia Malay sub-ethnic groups. Hatin, W. I., Nur-Shafawati, A. R., Zahri, M. K., Xu, S., Jin, L., Tan, S. G., . . . Consortium, H. P.-A. S. (2011). PLoS One, 6(4), e18312.]</li></pul>
<p>135) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:dMpQl7XwOw4C"strong>Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly2010</astrong>&nbsp; S Kim, YS Cho, HM Kim, O Chung, H Kim, S Jho, H Seomun, J Kim, ... Genome Biology 17 (1), 211, 2016</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19418260 Alpha-glucosidase folding during urea denaturation: enzyme kinetics and computational prediction. Wu, X. Q., Wang, J., Lu, Z. R., Tang, H. M., Park, D., Oh, S. H., . . . Zou, F. (2010). Appl Biochem Biotechnol, 160(5), 1341-1355.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/20536287 Differential evolutionary rates of neuronal transcriptome in Aplysia kurodai and Aplysia californica as a tool for gene mining. Choi, S. L., Lee, Y. S., Rim, Y. S., Kim, T. H., Moroz, L. L., Kandel, E. R., . . . Kaang, B. K. (2010). J Neurogenet, 24(2), 75-82.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19701810 The effect of trifluoroethanol on tyrosinase activity and conformation: inhibition kinetics and computational simulations. Lu, Z. R., Shi, L., Wang, J., Park, D., Bhak, J., Yang, J. M., . . . Zou, F. (2010). Appl Biochem Biotechnol, 160(7), 1896-1908.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/20686617 Gene flow between the Korean peninsula and its neighboring countries. Jung, J., Kang, H., Cho, Y. S., Oh, J. H., Ryu, M. H., Chung, H. W., . . . Kim, H. L. (2010). PLoS One, 5(7), e11855.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19277488 Kinetics of Zn(2+)-induced brain type creatine kinase unfolding and aggregation. Mu, H., Lu, Z. R., Park, D., Kim, B. C., Bhak, J., Zou, F., . . . Zhou, H. M. (2010). Appl Biochem Biotechnol, 160(5), 1309-1320.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/20624717 PDBWiki: added value through community annotation of the Protein Data Bank. Stehr, H., Duarte, J. M., Lappe, M., Bhak, J., &amp; Bolser, D. M. (2010). Database (Oxford), 2010, baq009.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/20645659 A proposal for the revision of molecular boundary typology. Kim, D. S., Won, C. I., &amp; Bhak, J. (2010). J Biomol Struct Dyn, 28(2), 277-288.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/20875130 Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection. Florez, A. F., Park, D., Bhak, J., Kim, B. C., Kuchinsky, A., Morris, J. H., . . . Muskus, C. (2010). BMC Bioinformatics, 11, 484.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/20129805 Sphericity of a protein via the beta-complex. Kim, D. S., Kim, J. K., Won, C. I., Kim, C. M., Park, J. Y., &nbspamp;Bhak, J. (2010). J Mol Graph Model, 28(7), 636-649.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19082922 Structural analysis and inhibitory kinetics of brain type creatine kinase by sodium dodecyl sulfate. Lu, Z. R., Oh, S. H., Zhou, S. S., Zou, H. C., Park, D., Park, S. J., . . . Zou, F. (2010). Appl Biochem Biotechnol, 160(3), 831-842.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/20004400 Systematic cyanobacterial membrane proteome analysis by combining acid hydrolysis and digestive enzymes with nano-liquid chromatography-Fourier transform mass spectrometry. Kwon, J., Oh, J., Park, C., Cho, K., Kim, S. I., Kim, S., . . . Choi, J. S. (2010). J Chromatogr A, 1217(3), 285-293.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/21131573 Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Kim, M. Y., Lee, S., Van, K., Kim, T. H., Jeong, S. C., Choi, I. Y., . . . Lee, S. H. (2010). Proc Natl Acad Sci U S A, 107(51), 22032-22037.]</li></pul>
<p>134) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:qCaWouos7ogC"strong>An adaptive detection method for fetal chromosomal aneuploidy using cell-free DNA from 447 Korean women2009</astrong>&nbsp; S Kim, HJ Jung, SH Han, SJ Lee, JS Kwon, MG Kim, H Chu, K Han, ... BMC medical genomics 9 (1), 61, 2016</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19958506 BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources. Lim, J., Kim, S. Y., Kim, S., Eo, H. S., Kim, C. B., Paek, W. K., . . . Bhak, J. (2009). BMC genomics, 10 Suppl 3, S8.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19958500 COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System. Jho, S., Kim, B. C., Ghang, H., Kim, J. H., Park, D., Kim, H. M., . . . Bhak, J. (2009). BMC genomics, 10 Suppl 3, S35.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19443183 DNA microarray analyses and interactomic predictions for atopic dermatitis. Lu, Z. R., Kim, W. S., Cho, I. H., Park, D., Bhak, J., Shi, L., . . . Zou, F. (2009). J Dermatol Sci, 55(2), 123-125.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18824329 Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses. Lu, Z. R., Park, T. H., Lee, E. S., Kim, K. J., Park, D., Kim, B. C., . . . Yang, J. M. (2009). J Dermatol Sci, 53(2), 146-150.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19061912 The effects of acrylamide on brain creatine kinase: inhibition kinetics and computational docking simulation. Lu, Z. R., Zou, H. C., Park, S. J., Park, D., Shi, L., Oh, S. H., . . . Zou, F. (2009). Int J Biol Macromol, 44(2), 128-132.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19470904 The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group. Ahn, S. M., Kim, T. H., Lee, S., Kim, D., Ghang, H., Kim, D. S., . . . Kim, S. J. (2009). Genome Res, 19(9), 1622-1629.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19958513 Gevab: a prototype genome variation analysis browsing server. Kim, W. Y., Kim, S. Y., Kim, T. H., Ahn, S. M., Byun, H. N., Kim, D., . . . Bhak, J. (2009). BMC Bioinformatics, 10 Suppl 15, S3.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19958510 The Korean Bird Information System (KBIS) through open and public participation. Paik, I. H., Lim, J., Chun, B. S., Jin, S. D., Yu, J. P., Lee, J. W., . . . Paek, W. K. (2009). BMC Bioinformatics, 10 Suppl 15, S11.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/20007900 Mapping human genetic diversity in Asia. Consortium, H. P.-A. S., Abdulla, M. A., Ahmed, I., Assawamakin, A., Bhak, J., Brahmachari, S. K., . . . Indian Genome Variation, C. (2009). Science, 326(5959), 1541-1545.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19958484 MitoInteractome: mitochondrial protein interactome database, and its application in &#39;aging network&#39; analysis. Reja, R., Venkatakrishnan, A. J., Lee, J., Kim, B. C., Ryu, J. W., Gong, S., . . . Park, D. (2009). BMC genomics, 10 Suppl 3, S20.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19958475 MitoVariome: a variome database of human mitochondrial DNA. Lee, Y. S., Kim, W. Y., Ji, M., Kim, J. H., &amp; Bhak, J. (2009). BMC genomics, 10 Suppl 3, S12.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19958497 PDbase: a database of Parkinson&#39;s disease-related genes and genetic variation using substantia nigra ESTs. Yang, J. O., Kim, W. Y., Jeong, S. Y., Oh, J. H., Jho, S., Bhak, J., &amp; Kim, N. S. (2009). BMC genomics, 10 Suppl 3, S32.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19306394 Planning the human variome project: the Spain report. Kaput, J., Cotton, R. G., Hardman, L., Watson, M., Al Aqeel, A. I., Al-Aama, J. Y., . . . Contributors to the Human Variome Project Planning, M. (2009). Human Mutation, 30(4), 496-510.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19157793 Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses. Lu, Z. R., Park, D., Lee, K. A., Ryu, J. W., Bhak, J., Shi, L., . . . Yang, J. M. (2009). J Dermatol Sci, 54(2), 126-129.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19958481 PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440. Park, S. J., Choi, J. S., Kim, B. C., Jho, S. W., Ryu, J. W., Park, D., . . . Kim, S. I. (2009). BMC genomics, 10 Suppl 3, S18.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19760752 ssSNPTarget: genome-wide splice-site Single Nucleotide Polymorphism database. Yang, J. O., Kim, W. Y., &amp; Bhak, J. (2009). Human Mutation, 30(12), E1010-1020.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19721878 Transcriptome and protein domain analyses in Aplysia nervous system with evolutionary implications. Lee, Y. S., Kim, T. H., Choi, S. L., Lee, S., Bhak, J., &nbspamp;Kaang, B. K. (2009). Commun Integr Biol, 2(4), 321-323.]</li></pul>
<p>133) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:SPgmg5JLkoEC"strong>RNA-Seq analysis reveals new evidence for inflammation-related changes in aged kidney2008</astrong>&nbsp; D Park, BC Kim, CH Kim, YJ Choi, HO Jeong, ME Kim, JS Lee, MH Park, ... Oncotarget 7 (21), 30037, 2016</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18037613 Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries. Sangket, U., Phongdara, A., Chotigeat, W., Nathan, D., Kim, W. Y., Bhak, J., . . . Tan, T. W. (2008). Bioinformatics, 24(2), 299-301.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18604500 Cyanobacterial hybrid kinase Sll0043 regulates phototaxis by suppressing pilin and twitching motility protein. Shin, B. J., Oh, J., Kang, S., Chung, Y. H., Park, Y. M., Kim, Y. H., . . . Choi, J. S. (2008). J Microbiol, 46(3), 300-308.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18808205 The effect of histidine residue modification on tyrosinase activity and conformation: inhibition kinetics and computational prediction. Guo, L., Lu, Z. R., Park, D., Oh, S. H., Shi, L., Park, S. J., . . . Zou, F. (2008). J Biomol Struct Dyn, 26(3), 395-402.]</li> <li>[https://link.springer.com/article/10.1007/s12257-007-0183-9 Identification of gene-related Korean patents and construction of a database server for Korean patent sequences. Lee, B., Kim, S.-K., Kim, T., Kim, S. S., Ryu, G. C., &nbspamp;Bhak, J. (2008). Biotechnology and Bioprocess Engineering, 13(2), 248.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19091018 An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases. Yang, J. O., Hwang, S., Oh, J., Bhak, J., &amp; Sohn, T. K. (2008). BMC Bioinformatics, 9 Suppl 12, S19.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19091024 An integrated Korean biodiversity and genetic information retrieval system. Lim, J., Bhak, J., Oh, H. M., Kim, C. B., Park, Y. H., &amp; Paek, W. K. (2008). BMC Bioinformatics, 9 Suppl 12, S24.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18448467 MassNet: a functional annotation service for protein mass spectrometry data. Park, D., Kim, B. C., Cho, S. W., Park, S. J., Choi, J. S., Kim, S. I., . . . Lee, S. (2008). Nucleic Acids Res, 36(Web Server issue), W491-495.]</li> <li>[http://www.koreascience.or.kr/article/JAKO200806135606418.page Personal genomics, bioinformatics, and variomics. Bhak, J., Ghang, H., Reja, R., &amp; Kim, S.-S. (2008). Genomics &amp; Informatics, 6(4), 161-165.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18023220 Pocket extraction on proteins via the Voronoi diagram of spheres. Kim, D., Cho, C. H., Cho, Y., Ryu, J., Bhak, J., &amp; Kim, D. S. (2008). J Mol Graph Model, 26(7), 1104-1112.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18215330 Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service. Kim, J. G., Park, D., Kim, B. C., Cho, S. W., Kim, Y. T., Park, Y. J., . . . Bhak, J. (2008). BMC Bioinformatics, 9, 41.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18948079 Prediction and evaluation of protein-protein interaction in keratinocyte differentiation. Yoon, H. K., Sohn, K. C., Lee, J. S., Kim, Y. J., Bhak, J., Yang, J. M., . . . Lee, J. H. (2008). Biochem Biophys Res Commun, 377(2), 662-667.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/21136834 Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics. Park, Y. D., Park, D., Bhak, J., &amp; Yang, J. M. (2008). Proteomics Clin Appl, 2(3), 290-300.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18315851 SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions. Kim, B. C., Kim, W. Y., Park, D., Chung, W. H., Shin, K. S., &amp; Bhak, J. (2008). BMC Bioinformatics, 9 Suppl 1, S2.]</li> <li>[http://www.koreascience.or.kr/article/JAKO200831235453829.page Structural Bioinformatics Analysis of Disease-related Mutations. Park, S.-J., Oh, S.-H., Park, D.-U., &amp; Bhak, J. (2008). Genomics &amp; Informatics, 6(3), 142-146.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18315852 SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803. Kim, W. Y., Kang, S., Kim, B. C., Oh, J., Cho, S., Bhak, J., &amp; Choi, J. S. (2008). BMC Bioinformatics, 9 Suppl 1, S20.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/19017802 Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai. Lee, Y. S., Choi, S. L., Kim, T. H., Lee, J. A., Kim, H. K., Kim, H., . . . Kaang, B. K. (2008). Proc Natl Acad Sci U S A, 105(47), 18602-18607.]</li></pul>
<p>132) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:F9HO9s0W2bwC"strong>An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes2007</astrong>&nbsp; YS Cho, H Kim, HM Kim, S Jho, JH Jun, YJ Lee, KS Chae, CG Kim, S Kim, ...&nbsp;Nature Communications 7, 2016</p>
<pul> <li>[http://www.koreascience.or.kr/article/JAKO200709906195530.page Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases. Park, D.-U., Lee, J.-W., Yoon, G.-S., Gong, S.-S., &amp; Bhak, J. (2007). Genomics &amp; Informatics, 5(4), 196-199.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/17977885 CONSORF: a consensus prediction system for prokaryotic coding sequences. Kang, S., Yang, S. J., Kim, S., &nbspamp;Bhak, J. (2007). Bioinformatics, 23(22), 3088-3090.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/17646709 Genomic distribution of simple sequence repeats in Brassica rapa. Hong, C. P., Piao, Z. Y., Kang, T. W., Batley, J., Yang, T. J., Hur, Y. K., . . . Lim, Y. P. (2007). Mol Cells, 23(3), 349-356.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/18305828 GS2PATH: a web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data. Yang, J. O., Charny, P., Lee, B., Kim, S., Bhak, J., &amp; Woo, H. G. (2007). Bioinformation, 2(5), 194-196.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/17057246 Impact of transcriptional properties on essentiality and evolutionary rate. Choi, J. K., Kim, S. C., Seo, J., Kim, S., &amp; Bhak, J. (2007). Genetics, 175(1), 199-206.]</li> <li>[https://link.springer.com/chapter/10.1007/978-3-540-74477-1_59 Multi-resolution protein model.Kim, D.-S., Lee, B., Won, C.-I., Kim, D., Ryu, J., Cho, Y., . . . Bhak, J. (2007). Paper presented at the International Conference on Computational Science and Its Applications.]</li></pul>
<p>131) <a class="gsc_a_at" href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:QAOzB4mb83kC"strong>The genetics of an early Neolithic pastoralist from the Zagros, Iran2006</astrong>&nbsp; M Gallego-Llorente, S Connell, ER Jones, DC Merrett, Y Jeon, A Eriksson, ... Scientific Reports 6, 2016</p>
<pul> <li>[http://www.koreascience.or.kr/article/JAKO200634741684826.page BioCC: an openfree hypertext bio community cluster for biology. Gong, S.-S., Kim, T.-H., Oh, J.-S., Kwon, J.-K., Cho, S.-A., Bolser, D., &amp; Bhak, J. (2006). Genomics &nbspamp;Informatics, 4(3), 125-128.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/15979829 Developmental rate and ploidy of embryos produced by nuclear transfer with different activation treatments in cattle. Bhak, J. S., Lee, S. L., Ock, S. A., Mohana Kumar, B., Choe, S. Y., &amp; Rho, G. J. (2006). Anim Reprod Sci, 92(1-2), 37-49.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/16682823 Functional annotation and analysis of Korean patented biological sequences using bioinformatics. Lee, B. W., Kim, T. H., Kim, S. K., Kim, S. S., Ryu, G. C., &amp; Bhak, J. (2006). Mol Cells, 21(2), 269-275.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/16845118 Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information. Lee, S., Lee, B., Jang, I., Kim, S., &amp; Bhak, J. (2006). Nucleic Acids Res, 34(Web Server issue), W99-103.]</li> <li>[https://link.springer.com/article/10.1631/jzus.2006.A1492 Parameter selection of pocket extraction algorithm using interaction interface. Kim, C.-M., Won, C.-I., Ryu, J., Cho, C.-H., Bhak, J., &amp; Kim, D.-S. (2006). Journal of Zhejiang University-Science A, 7(9), 1492-1499.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/16632644 Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Yang, T. J., Kim, J. S., Kwon, S. J., Lim, K. B., Choi, B. S., Kim, J. A., . . . Park, B. S. (2006). Plant Cell, 18(6), 1339-1347.]</li></pul>
<p>130)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:DUFsPKDdMi0C"strong>Genomic legacy of the African cheetah, Acinonyx jubatus2005</astrong>&nbsp;P Dobrynin, S Liu, G Tamazian, Z Xiong, AA Yurchenko, ...&nbsp;Genome biology 16 (1), 1-20, 2015</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/15613386 Architecture of basic building blocks in protein and domain structural interaction networks. Moon, H. S., Bhak, J., Lee, K. H., &amp; Lee, D. (2005). Bioinformatics, 21(8), 1479-1486.]</li> <li>[https://www.koreamed.org/article/0117GNI/2005.3.2.52 BioCovi: A Visualization Service for Comparative Genomics Analysis. Lee, J., Park, D., &amp; Bhak, J. (2005). Genomics Inform, 3(2), 52.]</li> <li>[http://www.koreascience.or.kr/article/JAKO200507921778146.page BioSubroutine: an Open Web Server for Bioinformatics Algorithms and Subroutines. Lee, J., Kim, H., Lee, W., Chung, D., &amp; Bhak, J. (2005). Genomics &amp; Informatics, 3(1), 35-38.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/15914543 Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). Park, D., Lee, S., Bolser, D., Schroeder, M., Lappe, M., Oh, D., &amp; Bhak, J. (2005). Bioinformatics, 21(15), 3234-3240.]</li> <li>[https://link.springer.com/article/10.1007/BF03167441 Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis. Kim, D.-S., Cho, Y., Kim, D., Kim, S., Bhak, J., &amp; Lee, S.-H. (2005). Japan Journal of Industrial and Applied Mathematics, 22(2), 251.]</li> <li>[http://www.koreascience.or.kr/article/JAKO200507921779715.page HExDB: Human EXon DataBase for Alternative Splicing Pattern Analysis and predicted human gene number. Park&sup1;, J., Lee&sup1;, M., Kim, T. H., &amp; Bhak, J. (2005). Genomics &nbspamp;Informatics, 3(3), 112-117.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/16122378 A protein domain interaction interface database: InterPare. Gong, S., Park, C., Choi, H., Ko, J., Jang, I., Lee, J., . . . Bhak, J. (2005). BMC Bioinformatics, 6, 207.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/15749693 PSIbase: a database of Protein Structural Interactome map (PSIMAP). Gong, S., Yoon, G., Jang, I., Bolser, D., Dafas, P., Schroeder, M., . . . Bhak, J. (2005). Bioinformatics, 21(10), 2541-2543.]</li></pul>
<p>129)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:9tXw7Op4-u0C"strong>Characterization of cetacean Numt and its application into cetacean phylogeny2004</astrong>&nbsp;YJ Ko, EC Yang, JH Lee, KW Lee, JY Jeong, K Park, O Chung, J Bhak, ... Genes &amp; Genomics 37 (12), 1061-1071, 2015</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/15610565 The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3&#39; untranslated regions. An, H. J., Lee, D., Lee, K. H., &amp; Bhak, J. (2004). BMC genomics, 5(1), 97.]</li> <li>[http://www.koreascience.or.kr/article/JAKO200407921777370.page The Atom of Evolution. Bhak, J., Bolser, D., Park, D., Cho, Y., Yoo, K., Lee, S., . . . Huston, M. (2004). Genomics &amp; Informatics, 2(4), 167-173.]</li> <li>[http://www.koreascience.or.kr/article/JAKO200407921776196.page High Correlation between Alu Elements and the Conversion of 3&#39;UTR of mRNAs Processed Pseudogenes. An, H. J., Na, D., Lee, D., Lee, K. H., &amp; Bhak, J. (2004). Genomics &amp; Informatics, 2(2), 86-91.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/15117749 HPID: the Human Protein Interaction Database. Han, K., Park, B., Kim, H., Hong, J., &nbspamp;Park, J. (2004). Bioinformatics, 20(15), 2466-2470.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/14764552 Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP). Kim, W. K., Bolser, D. M., &amp; Park, J. H. (2004). Bioinformatics, 20(7), 1138-1150.]</li> <li>[https://academic.oup.com/bioinformatics/article-abstract/20/10/1486/237030 Using convex hulls to extract interaction interfaces from known structures. Dafas, P., Bolser, D., Gomoluch, J., Park, J., &amp; Schroeder, M. (2004). Bioinformatics, 20(10), 1486-1490.]</li></pul>
<p>128)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:lRPiJ3GhvscC"strong>The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures2003</astrong></p>
<pul> <li>[http://www.koreascience.or.kr/article/JAKO200307921773980.page Biological network evolution hypothesis applied to protein structural interactome. Bolser, D. M., &nbspamp;O ChungPark, J. H. (2003). Genomics &amp; Informatics, 1(1), 7-19.]</li> <li>[http://www.koreascience.or.kr/article/JAKO200307921773944.page Challenges and New Approaches in Genomics and Bioinformatics. Park, J. H., &amp; Han, K. S Jin. (2003). Genomics &amp; Informatics, 1(1), 1-6.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/12625531 Different activation treatments for successful development of bovine oocytes following intracytoplasmic sperm injection. Ock, S. A., YS ChoBhak, J Lim. S., Balasubramanian, S., Lee, H Kim. J., Choe, S Jho. Y., &amp; Rho, G. J. (2003). Zygote, 11(1), HM 69-76.]</li> <li>[https://link.springer.com/chapter/10.1007/3-540-36175-8_16 Predicting protein interactions in human by homologous interactions in yeast.Kim, JH JunH., Park, HJ LeeJ., &amp; Han, K. (2003). Paper presented at the Pacific-Asia Conference on Knowledge Discovery and Data Mining.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/14531933 Visualisation and graph-theoretic analysis of a large-scale protein structural interactome. Bolser, D., Dafas, P., Harrington, R., Park, J., &amp; Schroeder, M. (2003). BMC Bioinformatics, 4, 45.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/12538268 Visualization and analysis of protein interactions. Ju, B.H., Park, B., Park, J. H., &amp; Han, K. Genome biology 16 (12003). Bioinformatics, 19(2), 1317-11, 2015318.]</li></pul>
<p>&nbsp;<strong>2002</strong></p>
<pul>127)&nbsp; <a href="li>[https://scholarlink.googlespringer.com/citations?view_op=view_citationchapter/10.1007/3-540-36151-0_35 InterViewer: Dynamic visualization of protein-protein interactions.Han, K., Ju, B.-H., &amp;hl=enPark, J. H. (2002). Paper presented at the International Symposium on Graph Drawing.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/14571373 Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair. Kim, W. K., Park, J., &amp;user=ZUBVdMAAAAAJSuh, J. K. (2002). Genome Inform, 13, 42-50.]</li> <li>[https://www.jstage.jst.go.jp/article/gi1990/13/0/13_0_318/_article/-char/ja/ Protein Interactions in the Whole Human Genome. Han, K., Park, B., Kim, H., Kim, H.-J., &amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:kvJssbFybhEC"Park, J. (2002). Genome Informatics, 13, 318-319.]</li>Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent <li>[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC139993/ Sequence similarity between stereocilin and otoancorin points to a>&nbsp;MG Llorenteunified mechanism for mechanotransduction in the mammalian inner ear. Jovine, ER JonesL., A ErikssonPark, V SiskaJ., KW Arthur, JW Arthur&amp; Wassarman, P.M.(2002). Science 350 BMC cell biology, 3(62621), 820-822, 201528.]</li></pul>
<p>&nbsp;<strong>2001</strong></p>
<pul>126) <li>[https://www.ncbi.nlm.nih.gov/pubmed/11791232 Conservation of protein interaction network in evolution. Park, J., &nbspamp;Bolser, D. (2001). Genome Inform, 12, 135-140.]</li> <a href="li>[https://scholarwww.ncbi.nlm.googlenih.comgov/citations?view_op=view_citationpubmed/11125048 A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3. Dietmann, S., Park, J., Notredame, C., Heger, A., Lappe, M., &amp;hl=enHolm, L. (2001). Nucleic Acids Res, 29(1), 55-57.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/11473004 Generating protein interaction maps from incomplete data: application to fold assignment. Lappe, M., Park, J., Niggemann, O., &amp;user=ZUBVdMAAAAAJHolm, L. (2001). Bioinformatics, 17 Suppl 1, S149-156.]</li> <li>[https://www.jstage.jst.go.jp/article/gi1990/12/0/12_0_480/_article/-char/ja/ An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server. Lee, J.-H., Koh, I. S., &amp;sortby=pubdatePark, J. (2001). Genome Informatics, 12, 480-481.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/11273711 Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. Park, J., Lappe, M., &amp;citation_for_view=ZUBVdMAAAAAJTeichmann, S. A. (2001). J Mol Biol, 307(3), 929-938.]</li> <li>[https:BFa5h04uPMwC">SLC15A2 genomic variation is associated with the extraordinary response of sorafenib treatment//www.ncbi.nlm.nih.gov/pubmed/11292848 PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome analysis in patients with hepatocellular carcinomaexpression and interaction information. Qian, J., Stenger, B., Wilson, C. A., Lin, J., Jansen, R., Teichmann, S. A., . . . Gerstein, M. (2001). Nucleic Acids Res, 29(8), 1750-1764.]</li> <li>[https://www.jstage.jst.go.jp/article/gi1990/12/0/12_0_350/_article/-char/ja/ Protein classification comparison server. Park, J.-H., Ryu, S.-R., Kim, C., Koh, I. S., &amp; Park, J. (2001). Genome Informatics, 12, 350-351.]</ali></pul>
<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; YS Lee, BH Kim, BC Kim, A Shin, JS Kim, SH Hong, JA Hwang, JA Lee, ... Oncotarget 5, 2015<strong>2000</strong></p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/10980157 DaliLite workbench for protein structure comparison. Holm, L., &nbspamp;Park, J. (2000). Bioinformatics, 16(6), 566-567.]</pli <pli>125)&nbsp;<a href="[https://scholarwww.ncbi.googlenlm.comnih.gov/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:ynsZFq2pu0MC">HEpD: A database describing epigenetic differences between Thoroughbred pubmed/11159309 Estimating the significance of sequence order in protein secondary structure and Jeju horses</a>&nbsp;JA Gimprediction. Park, S LeeJ., DS KimDietmann, KS JeongS., CP HongHeger, JH BaeA., JW Moon, YS Choi&amp; Holm, L.(2000).. Gene 560 Bioinformatics, 16(111), 83978-88, 2015</p> <p>&nbsp;987.]</pli <pli>124)&nbsp;<a href="[https://scholarwww.googlencbi.comnlm.nih.gov/pubmed/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:jKT558fuBk8C">Genome-Wide Analysis 10842732 Fast assignment of DNA Methylation before-and after Exercise in protein structures to sequences using the Thoroughbred Horse with MeDIPintermediate sequence library PDB-Seq</a>&nbsp;JA GimISL. Teichmann, CP HongS. A., DS KimChothia, JW MoonC., Y ChoiChurch, J EoG. M., YJ Kwon, JR Lee&amp; Park, J.(2000).. Molecules and cells 38 Bioinformatics, 16(32), 210, 2015117-124.]</pli <pli>[https://www.ncbi.nlm.nih.gov/pubmed/10871268 RSDB: representative protein sequence databases have high information content. Park, J., Holm, L., Heger, A., &nbspamp;Chothia, C. (2000). Bioinformatics, 16(5), 458-464.]</pli <pli>123)&nbsp;<a href="[https://scholarwww.ncbi.googlenlm.comnih.gov/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:hB2aVRuWZNwC">Whole genome sequencing of an ethnic Pathan pubmed/10842730 Sequence search algorithm assessment and testing toolkit (PakhtunSAT) from the north-west of Pakistan</a>&nbsp;M Ilyas, JS Kim. Park, J Cooper., YA ShinHolm, HM KimL., YS Cho, S Hwang, H Kim&amp; Chothia, C.(2000).. BMC genomics Bioinformatics, 16 (12), 172, 2015104-110.]</pli<p>&nbsp;</pul>
<p>122)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:mVC4hKzE2FoC"strong>HExDB: a database for epigenetic changes occurring after horse exercise1998</astrong>&nbsp;JA Gim, S Lee, DS Kim, KS Jeong, CP Hong, JH Bae, JW Moon, YS Choi, ... Genes &amp; Genomics 37 (3), 287-294, 2015</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/9545446 DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins. Park, J., &nbspamp;Teichmann, S. A. (1998). Bioinformatics, 14(2), 144-150.]</li> <li>[https://www.sciencedirect.com/science/article/pii/S0022283698922215#FN1 Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. Park, J., Karplus, K., Barrett, C., Hughey, R., Haussler, D., Hubbard, T., &amp; Chothia, C. (1998). Journal of molecular biology, 284(4), 1201-1210.]</li> <li>[https://www.ncbi.nlm.nih.gov/pubmed/9843945 Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements. Teichmann, S. A., Park, J., &amp; Chothia, C. (1998). Proc Natl Acad Sci U S A, 95(25), 14658-14663.]</li></pul>
<p>121)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:IHkkN1K1AlAC"strong>Insights into the evolution of longevity from the bowhead whale genome1997</astrong>&nbsp;M Keane, J Semeiks, AE Webb, YI Li, V Quesada, T Craig, LB Madsen, ... Cell reports 10 (1), 112-122, 2015</p>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/9367767 Intermediate sequences increase the detection of homology between sequences. Park, J., Teichmann, S. A., Hubbard, T., &nbspamp;Chothia, C. (1997). J Mol Biol, 273(1), 349-354.]</li></pul>
<p>120)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:oFn-K-OQSCAC"strong>O-033: SLC15A2 Genomic Variation Is Associated with the Extraordinary Response of Sorafenib Treatment: Whole-genome Analysis in Patients with Hepatocellular Carcinoma1996</astrong>&nbsp; BH Kim, BC Kim, JS Kim, JA Hwang, S Nam, J Bhak</p>
<pul>THE LIVERWEEK 2015 <li>[https://www.ncbi.nlm.nih.gov/pubmed/8772377 Protein structure prediction: playing the fold. Hubbard, T., Park, J., Lahm, A., Leplae, R., &amp; Tramontano, A. (11996). Trends Biochem Sci, 3721(8), 279-37, 2015281.]</li></pul>
<pul> <li>[https://www.ncbi.nlm.nih.gov/pubmed/9079378 Update on protein structure prediction: results of the 1995 IRBM workshop. Hubbard, T., &nbspamp;Tramontano, A. (1996). Fold Des, 1(3), R55-63.]</li></pul>
<p>119)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:1_W9tMSvGuwC"strong>Profiling Age-Related Epigenetic Markers of Stomach Adenocarcinoma in Young and Old Subjects1995</astrong>&nbsp;BC Kim, HO Jeong, D Park, CH Kim, EK Lee, DH Kim, E Im, ND Kim, ... Cancer informatics 14, 47, 2015</p>
<pul>&nbsp;</p>  <pli>118)&nbsp;<a href="[https://scholarwww.ncbi.googlenlm.comnih.gov/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdatepubmed/8710832 Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials. Hubbard, T. J., &amp;citation_for_view=ZUBVdMAAAAAJ:vjZqxyZ7hS4C">Whole-genome analysis of a patient with early-stage small-cell lung cancer</a>&nbsp;JY HanPark, YS LeeJ. (1995). Proteins, BC Kim, GK Lee, S Lee, EH Kim, HM Kim, J Bhak&nbsp; The pharmacogenomics journal 14 23(63), 503398-508, 2014402.]</li></pul>
<p>&nbsp;</p>
 
<p>117)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:GiYFt9mpioMC">The feasibility study of non-invasive fetal trisomy 18 and 21 detection with semiconductor sequencing platform</a>&nbsp; YJ Jeon, Y Zhou, Y Li, Q Guo, J Chen, S Quan, A Zhang, H Zheng, X Zhu, ..., 2014</p>
<p>&nbsp;</p>
 
<p>116)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:5LPo_wSKItgC">Genome-wide analysis of DNA methylation patterns in horse</a>&nbsp; JR Lee, CP Hong, JW Moon, YD Jung, DS Kim, TH Kim, JA Gim, JH Bae, ...&nbsp;BMC genomics 15 (1), 598, 2014</p>
 
<p>&nbsp;</p>
 
<p>115)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:-38epGy1wY0C">New Lung Cancer Panel for High-Throughput Targeted Resequencing</a>&nbsp; EH Kim, S Lee, J Park, K Lee, J Bhak, BC Kim&nbsp; Genomics &amp; informatics 12 (2), 50-57, 2014</p>
 
<p>&nbsp;</p>
 
<p>114)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:s1ouQE5r0WUC">OR12-1: Whole-Exome Sequencing Reveals Strong Genetic Predictors of Antithyroid Drugs Induced Agranulocytosis</a>&nbsp; SG Park, J Bhak, JS Kim, TH Kim, JH An, SY Rhee, HK Kim, MJ Kim, ..., 2014</p>
 
<p>&nbsp;</p>
 
<p>113)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:GtqhT-R7ZnwC">Identification and characterization of microRNAs in normal Equine tissues by Next Generation Sequencing</a>&nbsp;MC Kim, SW Lee, DY Ryu, FJ Cui, J Bhak, Y Kim&nbsp; PloS one 9 (4), e93662, 2014</p>
 
<p>&nbsp;</p>
 
<p>112)<strong>&nbsp;</strong><a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:nU66GSXDKhoC">Genomic profile analysis of diffuse-type gastric cancers</a>&nbsp;YS Lee, YS Cho, GK Lee, S Lee, YW Kim, S Jho, HM Kim, SH Hong, ... Genome Biol 15 (4), R55, 2014</p>
 
<p>&nbsp;</p>
 
<p>111)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:U5uP8zs9lfgC">Minke whale genome and aquatic adaptation in cetaceans</a>&nbsp; HS Yim, YS Cho, X Guang, SG Kang, JY Jeong, SS Cha, HM Oh, JH Lee, ... Nature genetics 46 (1), 88-92, 2013</p>
 
<p>&nbsp;</p>
 
<p>110)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:4QKQTXcH0q8C">Whole genome sequence and analysis of the Marwari horse breed and its genetic origin</a>&nbsp; JH Jun, YS Cho, H Hu, HM Kim, S Jho, P Gadhvi, KM Park, J Lim, ... BMC genomics 15 (Suppl 9), S4, 2014</p>
 
<p>&nbsp;</p>
 
<p>109) &nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:vD2iS2Kej30C">PPP1R1B-STARD3 chimeric fusion transcript in human gastric cancer promotes tumorigenesis through activation of PI3K/AKT signaling</a>&nbsp; SM Yun, K Yoon, S Lee, E Kim, SH Kong, J Choe, JM Kang, TS Han, ... Oncogene, 2014</p>
 
<p>&nbsp;</p>
 
<p>108&nbsp;)&nbsp;&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:dFKc6_kCK1wC">Whole genome comparison of donor and cloned dogs</a>&nbsp; HM Kim, YS Cho, H Kim, S Jho, B Son, JY Choi, S Kim, BC Lee, J Bhak, ... Scientific reports 3, 2013</p>
 
<p>&nbsp;</p>
 
<p>107)&nbsp;<a href="https://scholar.google.com/citations?view_op=view_citation&amp;hl=en&amp;user=ZUBVdMAAAAAJ&amp;cstart=20&amp;sortby=pubdate&amp;citation_for_view=ZUBVdMAAAAAJ:J4E9jCG1tHUC">The tiger genome and comparative analysis with lion and snow leopard genomes</a>&nbsp; YS Cho, L Hu, H Hou, H Lee, J Xu, S Kwon, S Oh, HM Kim, S Jho, S Kim, ... Nature communications 4, 2013</p>
 
<p>&nbsp;</p>
 
<p>106)<strong>&nbsp;</strong>iAnn: An Event Sharing Platform for the Life Sciences.</p>
 
<p>Jimenez RC, Albar JP,&nbsp;<strong>Bhak J</strong>, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider MV, Schneider R, Via A, Villaveces JM, Yu P, Attwood TK, Corpas M.&nbsp; Bioinformatics. 2013 Jun 5. [Epub ahead of print]</p>
 
<p>&nbsp;</p>
 
<p><strong>105)&nbsp;</strong>Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers.</p>
 
<p>Yoon K, Lee S, Han TS, Moon SY, Yun SM, Kong SH, Jho S, Choe J, Yu J, Lee HJ, Park JH, Kim HM, Lee SY, Park J, Kim WH,&nbsp;<strong>Bhak J</strong>, Yang HK, Kim SJ.&nbsp; Genome Res. 2013 Jun 4.</p>
 
<p>&nbsp;</p>
 
<p><strong>104)&nbsp;</strong>The genetic basis of white tigers.</p>
 
<p>Xu X, Dong GX, Hu XS, Miao L, Zhang XL, Zhang DL, Yang HD, Zhang TY, Zou ZT, Zhang TT, Zhuang Y<strong>, Bhak J</strong>, Cho YS, Dai WT, Jiang TJ, Xie C, Li R, Luo SJ.</p>
 
<p>Curr Biol. 2013 Jun 3;23(11):1031-5. doi: 10.1016/j.cub.2013.04.054. Epub 2013 May 23.</p>
 
<p>&nbsp;</p>
 
<p><strong>103)&nbsp;</strong>Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse.</p>
 
<p>Kim H, Lee T, Park W, Lee JW, Kim J, Lee BY, Ahn H, Moon S, Cho S, Do KT, Kim HS, Lee HK, Lee CK, Kong HS, Yang YM, Park J, Kim HM, Kim BC, Hwang S,&nbsp;<strong>Bhak J</strong>, Burt D, Park KD, Cho BW, Kim H.</p>
 
<p>DNA Res. 2013;20(3):287-98. doi: 10.1093/dnares/dst010. Epub 2013 Apr 11.</p>
 
<p><strong>&lt;strong&gt;102)</strong>Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq&nbsp;Park KD,&nbsp;Park J,&nbsp;&lt;/strong&gt;<strong>Ko J,&nbsp;Kim BC,&nbsp;Kim HS,&nbsp;Ahn K,&nbsp;Do KT,&nbsp;Choi H,&nbsp;Kim HM,&nbsp;Song S,&nbsp;Lee S,&nbsp;Jho S,&nbsp;Kong HS,&nbsp;Yang YM,&nbsp;Jhun BH,&nbsp;Kim C,Kim TH,&nbsp;Hwang S,&nbsp;Bhak&nbsp;J,&nbsp;Lee HK,&nbsp;Cho BW.</strong></p>
 
<p>&nbsp;</p>
 
<p><strong>101)&nbsp;A public resource facilitating clinical use of genomes.&nbsp;</strong><strong><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Ball%20MP%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Ball MP,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Thakuria%20JV%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Thakuria JV,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Zaranek%20AW%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Zaranek AW,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Clegg%20T%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Clegg T,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Rosenbaum%20AM%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Rosenbaum AM,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Wu%20X%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Wu X,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Angrist%20M%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Angrist M,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bhak%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Bhak J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bobe%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Bobe J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Callow%20MJ%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Callow MJ,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Cano%20C%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Cano C,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Chou%20MF%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Chou MF,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Chung%20WK%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Chung WK,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Douglas%20SM%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Douglas SM,</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Estep%20PW%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Estep PW,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Gore%20A%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Gore A,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Hulick%20P%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Hulick P,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Labarga%20A%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Labarga A,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20JH%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Lee JH,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lunshof%20JE%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Lunshof JE,&nbsp;</a><a 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href="http://www.ncbi.nlm.nih.gov/pubmed?term=Seo%20JS%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Seo JS,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Zhang%20K%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Zhang K,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Rehm%20HL%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Rehm HL,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Church%20GM%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22797899">Church GM.&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed/22797899" title="Proceedings of the National Academy of Sciences of the United States of America."><em>Proc Natl Acad Sci USA.&nbsp;2012 Jul 13.</em></a></strong></p>
 
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<p><strong>100)&nbsp;Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion.&nbsp;</strong><strong><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Xu%20S%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22396590">Xu S,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Pugach%20I%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22396590">Pugach I,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Stoneking%20M%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22396590">Stoneking M,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kayser%20M%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22396590">Kayser M,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Jin%20L%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22396590">Jin L;&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=HUGO%20Pan-Asian%20SNP%20Consortium%5BCorporate%20Author%5D">HUGO Pan-Asian SNP Consortium.&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed/22396590" title="Proceedings of the National Academy of Sciences of the United States of America."><em>Proc Natl Acad Sci USA.&nbsp;2012 Mar 20;109(12):4574-9. Epub 2012 Mar 6.</em></a></strong></p>
 
<p>&nbsp;</p>
 
<p><strong>99)&nbsp;MetaBase--the wiki-database of biological databases.&nbsp;</strong><strong><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bolser%20DM%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Bolser DM,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Chibon%20PY%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Chibon PY,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Palopoli%20N%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Palopoli N,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Gong%20S%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Gong S,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Jacob%20D%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Jacob D,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Del%20Angel%20VD%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Del Angel VD,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Swan%20D%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Swan D,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bassi%20S%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Bassi S,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Gonz%C3%A1lez%20V%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Gonz&aacute;lez V,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Suravajhala%20P%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Suravajhala P,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Hwang%20S%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Hwang S,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Romano%20P%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Romano P,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Edwards%20R%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Edwards R,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bishop%20B%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Bishop B,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Eargle%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Eargle J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Shtatland%20T%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Shtatland T,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Provart%20NJ%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Provart NJ,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Clements%20D%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Clements D,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Renfro%20DP%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Renfro DP,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bhak%20D%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Bhak D,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bhak%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22139927">Bhak J.&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed/22139927" title="Nucleic acids research."><em>Nucleic Acids Res.&nbsp;2012 Jan;40(Database issue):D1250-4. Epub 2011 Dec 1.</em></a></strong></p>
 
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<p><strong>98)&nbsp;Liverome: a curated database of liver cancer-related gene signatures with self-contained context information.&nbsp;</strong><strong><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20L%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Lee L,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Wang%20K%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Wang K,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Li%20G%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Li G,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Xie%20Z%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Xie Z,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Wang%20Y%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Wang Y,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Xu%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Xu J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Sun%20S%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Sun S,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Pocalyko%20D%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Pocalyko D,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bhak%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Bhak J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20C%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Kim C,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20KH%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Lee KH,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Jang%20YJ%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Jang YJ,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Yeom%20YI%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Yeom YI,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Yoo%20HS%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Yoo HS,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Hwang%20S%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22369201">Hwang S.&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed/22369201" title="BMC genomics."><em>BMC Genomics&nbsp;2011 Nov 30;12 Suppl 3:S3. Epub 2011 Nov 30.</em>.</a></strong></p>
 
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<p><strong>97)&nbsp;Identification of close relatives in the HUGO Pan-Asian SNP database.&nbsp;</strong><strong><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Yang%20X%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22242128">Yang X,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Xu%20S%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22242128">Xu S;&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=HUGO%20Pan-Asian%20SNP%20Consortium%5BCorporate%20Author%5D">HUGO Pan-Asian SNP Consortium<u>.</u></a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Indian%20Genome%20Variation%20Consortium%5BCorporate%20Author%5D">Indian Genome Variation Consortium.&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed/22242128" title="PloS one."><em>PLoS One.&nbsp;2011;6(12):e29502. Epub 2011 Dec 29.</em></a></strong></p>
 
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<p><strong>96)&nbsp;De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis.&nbsp;</strong><strong><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Hyun%20TK%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Hyun TK,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Rim%20Y%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Rim Y,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Jang%20HJ%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Jang HJ,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20CH%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Kim CH,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Park%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Park J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kumar%20R%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Kumar R,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20S%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Lee S,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20BC%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Kim BC,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Bhak%20J%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Bhak J,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Nguyen-Quoc%20B%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Nguyen-Quoc B,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20SW%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Kim SW,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Lee%20SY%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Lee SY,&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Kim%20JY%5BAuthor%5D&amp;cauthor=true&amp;cauthor_uid=22580955">Kim JY.&nbsp;</a><a href="http://www.ncbi.nlm.nih.gov/pubmed/22580955" title="Plant molecular biology."><em>Plant Mol Biol&nbsp;2012 Jul;79(4-5):413-27. Epub 2012 May 12.</em>.</a></strong></p>
 
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<p>95)&nbsp;<strong>Mutational hotspots in the mitochondrial genome of lung cancer</strong><u>.</u>&nbsp;Choi SJ, Kim SH, Kang HY, Lee J,&nbsp;<strong>Bhak JH</strong>, Sohn I, Jung SH, Choi YS, Kim HK, Han J, Huh N, Lee G, Kim BC, Kim&nbsp;<em>J.&nbsp;Biochem Biophys Res Commun.</em>&nbsp;2011 Apr 1;407(1):23-7. Epub 2011 Feb 18.</p>
 
<p>&nbsp;</p>
 
<p>94)&nbsp;<strong>Population genetic structure of peninsular Malaysia Malay sub-ethnic groups</strong>.&nbsp;Hatin WI, Nur-Shafawati AR, Zahri MK, Xu S, Jin L, Tan SG, Rizman-Idid M, Zilfalil BA;&nbsp;<strong>HUGO Pan-Asian SNP Consortium</strong>.&nbsp;<em>PLoS One.</em>&nbsp;2011 Apr 5;6(4):e18312.</p>
 
<p>&nbsp;</p>
 
<p>93)&nbsp;<strong>BetaDock: shape-priority docking method based on beta-complex</strong>.&nbsp;Kim DS, Kim CM, Won CI, Kim JK, Ryu J, Cho Y, Lee C,&nbsp;<strong>Bhak J</strong>.&nbsp;<em>J Biomol Struct Dyn</em>. 2011 Aug;29(1):219-42.</p>
 
<p>&nbsp;</p>
 
<p>92)&nbsp;<strong>PanSNPdb: the Pan-Asian SNP genotyping database</strong>.&nbsp;Ngamphiw C, Assawamakin A, Xu S, Shaw PJ, Yang JO, Ghang H,&nbsp;<strong>Bhak J</strong>, Liu E, Tongsima S; HUGO Pan-Asian SNP Consortium.&nbsp;<em>PLoS One</em>. 2011;6(6):e21451. Epub 2011 Jun 23.</p>
 
<p>&nbsp;</p>
 
<p>91)&nbsp;<strong>Gene expression pattern in transmitochondrial cytoplasmic hybrid cells harboring type 2 diabetes-associated mitochondrial DNA haplogroups</strong>. Hwang S, Kwak SH,&nbsp;<strong>Bhak J</strong>, Kang HS, Lee YR, Koo BK, Park KS, Lee HK, Cho YM.&nbsp;<em>PLoS One</em>. 2011;6(7):e22116. Epub 2011 Jul 13.</p>
 
<p>&nbsp;</p>
 
<p>90)&nbsp;<strong>Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection</strong>.&nbsp;Fl&oacute;rez AF, Park D,&nbsp;<strong>Bhak J</strong>, Kim BC, Kuchinsky A, Morris JH, Espinosa J, Muskus C.</p>
 
<p><em>BMC Bioinformatics</em>. 2010 Sep 27;11:484.</p>
 
<p>&nbsp;</p>
 
<p>89)&nbsp;<strong>A proposal for the revision of molecular boundary typology</strong>. Kim DS, Won CI,&nbsp;<strong>Bhak J</strong>.&nbsp;<em>J Biomol Struct Dyn</em>. 2010 Oct;28(2):277-88.</p>
 
<p>&nbsp;</p>
 
<p>88)&nbsp;<strong>Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome</strong>.&nbsp;Moon Young Kima,1, Sunghoon Leeb,1,2, Kyujung Vana,1, Tae-Hyung Kimb,1,2, Soon-Chun Jeongc, Ik-Young Choid, Dae-Soo Kimb, Yong-Seok Leeb, Daeui Parkb, Jianxin Mae, Woo-Yeon Kimb, Byoung-Chul Kimb, Sungjin Parkb, Kyung-A Leeb, Dong Hyun Kima, Kil Hyun Kima, Jin Hee Shina, Young Eun Janga, Kyung Do Kima, Wei Xian Liua, Tanapon Chaisana, Yang Jae Kanga, Yeong-Ho Leea, Kook-Hyung Kimf, Jung-Kyung Moong, Jeremy Schmutzh, Scott A. Jacksone,&nbsp;<strong>Jong Bhak*</strong>&nbsp;and Suk-Ha Lee*.&nbsp;<em>Proc Natl Acad Sci</em>&nbsp;U S A. 2010 Dec 21;107(51):22032-7. Epub 2010 Dec 3.</p>
 
<p><br />
87)&nbsp;<strong>Gene Flow between the Korean Peninsula and Its Neighboring Countries</strong>.&nbsp;Jongsun Jung, Hoyoung Kang, Yoon Shin Cho, Ji Hee Oh, Min Hyung Ryu, Hye Won Chung, Jeong-Sun Seo, Jong-Eun Lee, Bermseok Oh,&nbsp;<strong>Jong Bhak</strong>, and Hyung-Lae Kim*.&nbsp;<em>PLoS ONE</em>&nbsp;5(7):e11855. doi:10.1371/journal.pone.0011855. 20100729&nbsp;<br />
<br />
86)&nbsp;<strong>PDBWiki</strong>:&nbsp;<strong>added value through community annotation of the Protein Data Bank</strong>. Henning Stehr,*, Jose M. Duarte1, Michael Lappe1,&nbsp;<strong>Jong Bhak</strong>,* and Dan M. Bolser.&nbsp;<em>Database</em>, Vol. 2010:baq009; doi:10.1093/database/baq009.<br />
&nbsp;<br />
85)&nbsp;<strong>Mapping Human Genetic Diversity in Asia</strong>. The HUGO Pan-Asian SNP Consortium.&nbsp;<em>Science</em>. 2009. Dec. 11th. (As the Korean Principal Investigator)&nbsp;<a href="http://www.ncbi.nlm.nih.gov/pubmed/20007900" rel="nofollow">http://www.ncbi.nlm.nih.gov/pubmed/20007900</a><br />
&nbsp;</p>
 
<p>84)&nbsp;<strong>PDbase: a database of Parkinson&#39;s Disease-related genes and genetic variation using substantia nigra ESTs</strong>.Yang JO, Kim WY, Jeong SY, Oh JH, Jho S,&nbsp;<strong>Bhak J*</strong>, and&nbsp;Kim NS*.&nbsp;<em>BMC Genomics</em>&nbsp;2009, 10(Suppl 3):S32 (3 December 2009).</p>
 
<p>&nbsp;</p>
 
<p>83)&nbsp;<strong>MitoInteractome: Mitochondrial protein interactome database, and its application in &#39;aging network&#39; analysis</strong>. Reja R, Venkatakrishnan AJ, Lee J, Kim BC, Ryu JW, Gong S,<strong>&nbsp;Bhak J*</strong>, and &nbsp;Park D*.<em>BMC Genomics</em>&nbsp;2009, 10(Suppl 3):S20 (3 December 2009)</p>
 
<p>&nbsp;<br />
82)&nbsp;<strong>PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440</strong>.Park SJ, Choi JS, Kim BC, Jho SW, Ryu JW, Park D, Lee KA,&nbsp;<strong>Bhak J*</strong>, and Kim SI*.&nbsp;<em>BMC Genomics</em>&nbsp;2009, 10(Suppl 3):S18 (3 December 2009).</p>
 
<p>&nbsp;<br />
81)&nbsp;<strong>The Korean Bird Information System (KBIS) through open and public participation</strong>.&nbsp;Paik IH, Lim J, Chun BS, Jin SD, Yu JP, Lee JW,&nbsp;<strong>Bhak J</strong>, and Paek WK.&nbsp;<em>BMC Bioinformatics</em>&nbsp;2009, 10(Suppl 15):S11 (3 December 2009).<br />
&nbsp;</p>
 
<p>80)&nbsp;<strong>Gevab: a prototype genome variation analysis browsing server</strong>. Kim WY, Kim SY, Kim TH, Ahn SM, Byun HN, Kim D, Kim DS, Lee YS, Ghang H, Park D, Kim BC, Kim C, Lee S, Kim SJ, and&nbsp;<strong>Bhak J*</strong><strong>.</strong>&nbsp;<em>BMC Bioinformatics</em>&nbsp;2009, 10(Suppl 15):S3 (3 December 2009).</p>
 
<p>&nbsp;</p>
 
<p>79)&nbsp;<strong>MitoVariome: a variome database of human mitochondrial DNA</strong>. Lee YS, Kim WY, Ji M, Kim JH, and&nbsp;<strong>Bhak J*</strong><strong>.</strong>&nbsp;<em>BMC Genomics</em>&nbsp;2009, 10(Suppl 3):S12 (3 December 2009).</p>
 
<p>&nbsp;<br />
78)<strong>&nbsp;COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System</strong>.<br />
Jho S, Kim BC, Ghang H, Kim JH, Park D, Kim HM, Jung S, Yoo K, Kim HJ, Lee S, and&nbsp;<strong>Bhak J*</strong>.&nbsp;<em>BMC Genomics</em>&nbsp;2009, 10(Suppl 3):S35 (3 December 2009).</p>
 
<p>&nbsp;<br />
77)<strong>&nbsp;BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources</strong>.Lim J, Kim SY, Kim S, Eo HS, Kim CB, Paek WK, Kim W*, and&nbsp;<strong>Bhak J*</strong>.&nbsp;<em>BMC Genomics 2009</em>, 10(Suppl 3):S8 (3 December 2009).</p>
 
<p>&nbsp;<br />
76)<strong>&nbsp;ssSNPTarget: Genome-Wide Splice-Site Single Nucleotide Polymorphism Database</strong>. Ok Yang J, Kim WY, and&nbsp;<strong>Bhak J</strong>.&nbsp;<em>Human mutation, 2009 Sep. 16th,&nbsp;</em>PMID: 19760752.</p>
 
<p><br />
75)<strong>&nbsp;The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group</strong>. Sung-Min Ahn, Tae-Hyung Kim, Sunghoon Lee, Deokhoon Kim, Ho Ghang, Daesoo Kim, Byoung-Chul Kim, Sang-Yoon Kim, Woo-Yeon Kim, Chulhong Kim, Daeui Park, Yong Seok Lee, Sangsoo Kim, Rohit Reja, Sungwoong Jho, Chang Geun Kim, Ji-Young Cha, Kyung-Hee Kim, Bonghee Lee,&nbsp;<strong>Jong Bhak*</strong>, and Seong-Jin Kim*.&nbsp;<em>Genome Research</em>, May 26, 2009. PMID: 19470904.<br />
<br />
74)&nbsp;<strong>Planning the Human Variome Project: The Spain report</strong>. Kaput J, Cotton RG, Hardman L, Watson M, Al Aqeel AI, Al-Aama JY, Al-Mulla F, Alonso S, Aretz S, Auerbach AD, Bapat B, Bernstein IT,&nbsp;<strong>Bhak J</strong>, Bleoo SL, Bl&ouml;cker H, Brenner SE, Burn J, Bustamante M, Calzone R, Cambon-Thomsen A, Cargill M, Carrera P, Cavedon L, Cho YS, Chung YJ, Claustres M, Cutting G, Dalgleish R, den Dunnen JT, D&iacute;az C, Dobrowolski S, Dos Santos MR, Ekong R, Flanagan SB, Flicek P, Furukawa Y, Genuardi M, Ghang H, Golubenko MV, Greenblatt MS, Hamosh A, Hancock JM, Hardison R, Harrison TM, Hoffmann R, Horaitis R, Howard HJ, Barash CI, Izagirre N, Jung J, Kojima T, Laradi S, Lee YS, Lee JY, Gil-da-Silva-Lopes VL, Macrae FA, Maglott D, Marafie MJ, Marsh SG, Matsubara Y, Messiaen LM, M&ouml;slein G, Netea MG, Norton ML, Oefner PJ, Oetting WS, O&#39;Leary JC, de Ramirez AM, Paalman MH, Parboosingh J, Patrinos GP, Perozzi G, Phillips IR, Povey S, Prasad S, Qi M, Quin DJ, Ramesar RS, Richards CS, Savige J, Scheible DG, Scott RJ, Seminara D, Shephard EA, Sijmons RH, Smith TD, Sobrido MJ, Tanaka T, Tavtigian SV, Taylor GR, Teague J, T&ouml;pel T, Ullman-Cullere M, Utsunomiya J, van Kranen HJ, Vihinen M, Webb E, Weber TK, Yeager M, Yeom YI, Yim SH, Yoo HS; on behalf of contributors to the Human Variome Project Planning Meeting. Hum Mutat. 2009 March 20; 30(4):496-510.&nbsp; PMID: 19306394 [PubMed - indexed for MEDLINE].<br />
<br />
73)&nbsp;<strong>Kinetics of Zn2+ -induced Brain Type Creatine Kinase Unfolding and Aggregation</strong>. Mu H, L&uuml; ZR, Park D, Kim BC,&nbsp;<strong>Bhak J</strong>, Zou F, Yang JM, Li S, Park YD, Zou HC, Zhou HM.&nbsp;<em>Appl Biochem Biotechnol</em>. 2009 Mar 11.<br />
&nbsp;</p>
 
<p>72)&nbsp;<strong>Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses</strong>. L&uuml; ZR, Park D, Lee KA, Ryu JW,&nbsp;<strong>Bhak J</strong>, Shi L, Lee DY, Park YD, Zou F, Yang JM. J Dermatol Sci. 2009 Jan 19.</p>
 
<p>&nbsp;</p>
 
<p>71)&nbsp;<strong>The effects of acrylamide on brain creatine kinase: Inhibition kinetics and computational docking simulation</strong>. Zhi-Rong L&uuml;a, He-Chang Zou, Seong Jin Park, Daeui Park, Long Shi, Sang Ho Oh, Yong-Doo Park,&nbsp;<strong>Jong Bhak</strong><strong>,</strong>&nbsp;and Fei Zou, INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2009, 44(2):128-132.</p>
 
<p><br />
70)&nbsp;<strong>Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses</strong>. Zhi-Rong L&uuml;1, a, Tae-Ho Park1, b, Eil-Soo Leec, Kea-Jeung Kimb, Daeui Parkd, Byoung-Chul Kim, Seong-Woong Chod,&nbsp;<strong>Jong Bhak</strong>, Yong-Doo Park, Fei Zoua, and Jun-Mo Yang.&nbsp;<em>Journal of Dermatological Science</em>, 2009, 53(2):146-165.<br />
<br />
<strong>69) Personal Genomics, Bioinformatics, and Variomics</strong>.&nbsp;<strong>Jong Bhak</strong>, Ho Ghang, Rohit Reja, and Sangsoo Kim.&nbsp;<em>Genomics &amp; Informatics</em>, 2008, 6(4):161-165.<br />
<br />
68)&nbsp;<strong>An integrated korean biodiversity and genetic information retrieval system</strong>. Jeongheui Lim,&nbsp;<strong>Jong Bhak</strong>, Hee-Mock Oh, Chang-Bae Kim, Yong-Ha Park, and Woon Kee Paek.&nbsp;<em>BMC Bioinformatics</em>, 2008, 9(12):S24.<br />
<br />
67)&nbsp;<strong>An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases</strong>. Jin Ok Yang, Sohyun Hwang, Jeongsu Oh,&nbsp;<strong>Jong Bhak</strong><strong>,</strong>&nbsp;and Tae-Kwon Sohn.&nbsp;<em>BMC Bioinformatics</em>, 2008, 9(12):S19.<br />
<br />
66)&nbsp;<strong>Prediction and evaluation of protein-protein interaction in keratinocyte differentiation.</strong>&nbsp;Hyun Kyung Yoon, Kyung-Cheol Sohn, Jung-Suk Lee, Yu Jin Kim,&nbsp;<strong>Jong Bhak</strong>, Jun-Mo Yang, Kwan-Hee You, Chang-Deok Kim, Jeung-Hoon Lee.&nbsp;<em>BBRC</em>, 2008,377(2):662-667.<br />
<br />
65)&nbsp;<strong>Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai</strong>. Yong-seok Lee, Sun-Lim Choi, Tae-Hyung Kim, Jin-A Lee, Hyong Kyu Kim, Hyoung Kim, Deok-Jin Jang, Jennifer J. Lee, Sunghoon Lee, Gwang Sik Sin, Chang-Bae Kim, Yutaka Suzuki, Sumio Sugano, Tai Kubo, Leonid L. Moroz, Eric R. Kandel,&nbsp;<strong>Jong Bhak</strong><strong>,</strong>&nbsp;and Bong-Kiun Kaang.&nbsp;<em>PNAS</em>, 2008, 105(47):18602-18607.<br />
<br />
64)&nbsp;<strong>The Effect of Histidine Residue Modification on Tyrosinase Activity and Conformation: Inhibition Kinetics and Computational Prediction</strong>. Lin Gou, Zhi-Rong Lu, Daeui Park, Sang Ho Oh, Long Shi, Seong Jin Park,&nbsp;<strong>Jong Bhak</strong>, Yong-Doo Park, Zhen-Long Ren and Fei Zou.&nbsp;<em>Journal of Biomolecular Structure &amp; Dynamics</em>, 2008, 26(3):395-401.<br />
<br />
63)&nbsp;<strong>Structural Bioinformatics Analysis of Disease-related Mutations</strong>. Seong-Jin Park, Sangho Oh, Daeui Park and&nbsp;<strong>Jong Bhak</strong>.&nbsp;<em>Genomics &amp; Informatics</em>, 2008(September), 6(3):142-146.<br />
<br />
62)&nbsp;<strong>Identification of gene-related Korean patents and construction of a database sever for Korean patent sequences</strong>. Byungwook Lee, Seon Kyu Kim, Tae Hyung Kim, Sangsoo Kim, Gee Chan Ryu and<strong>Jong Bhak</strong>.&nbsp;<em>BIOTECHNOLOGY AND BIOPROCESS ENGINEERING</em>, 2008, 13(2):248-251.<br />
<br />
61)&nbsp;<strong>MassNet: a functional annotation service for protein mass spectrometry data</strong>. Daeui Park, Byoung-chul Kim, Seong-Woong Cho, Seong-Jin Park, Jong-Soon Choi, Seung Il Kim,&nbsp;<strong>Jong Bhak</strong><strong>,</strong>&nbsp;and Sunghoon Lee.&nbsp;<em>Nucleic Acids Research</em>, 2008, 1-5.<br />
<br />
60)&nbsp;<strong>Cyanobacterial hybrid kinase SLL0043 regulates phototaxis by suppressing pilin and twitching motility protein</strong>. Bong-Jeong Shin, Jeehyun Oh, Sungsoo Kang, Young-Ho Chung, Young Mok Park, Young Hwan Kim, Seungil Kim,&nbsp;<strong>Jong Bhak</strong><strong>,</strong>&nbsp;and Jong-Soon Choi.&nbsp;<em>JOURNAL OF MICROBIOLOGY</em>, 2008, 46(3):300-308.<br />
<br />
59)&nbsp;<strong>Automatic synthronization and distribution of biological databases and software over low-bandwidth networks among developing countries</strong>. Unitsa Sangket, Amornrat Phongdara, Wilaiwan Chotigeat, Darran Nathan, Woo-Yeon Kim,&nbsp;<strong>Jong Bhak</strong>, Chumpol Ngamphiw, Sissades Tongsima, Asif M. Khan, Honghuang Lin, and Tin Wee Tan.&nbsp;<em>Bioinformatics</em>, 2008, 24(2):299-301.<br />
<br />
58)&nbsp;<strong>Pocket extraction on proteins via the Voronoi diagram of spheres</strong>. Donguk Kim, Cheol-Hyung Cho, Youngsong Cho, Joonghyun Ryu,&nbsp;<strong>Jonghwa Bhak</strong><strong>,</strong>&nbsp;and Deok-Soo Kim.&nbsp;<em>Journal of Molecular Graphics &amp; Modelling</em>, 2008, 26(7):1104-1112. (SCI)<br />
<br />
57)&nbsp;<strong>Predicting the Interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service</strong>. Jeong-Gu Kim, Daeui Park, Byoung-Chul Kim, Seong-Woong Cho, Yeong Tae Kim, Young-Jin Park, Hee Jung Cho, Hyunseok Park, Ki-Bong Kim, Kyong-Oh Yoon, Soo-Jun Park, Byoung-Moo Lee and&nbsp;<strong>Jong Bhak</strong>. BMC Bioinformatics, 2008, 9:41.<br />
<br />
56)&nbsp;<strong>SNP@Promoter: A database of human SNPs (Single Nucleotide Polymorphisms) within putative promoter region</strong>. Byoung-Chul Kim, Woo-Yeon Kim, Daeui Park, Won-Hyong Chung, Kwang-sik Shin and&nbsp;<strong>Jong Bhak</strong>*. BMC Bioinformatics, 13 Feb. 2008, 9:S1-S2.<br />
<br />
55)&nbsp;<strong>SynechoNET: integrated protein-protein interaction database of a model cyanobacterium /Synechocystis/ sp. PCC 6803</strong>. Woo-Yeon Kim*, Sungsoo Kang*, Byoung-Chul Kim, Jeehyun Oh, Seongwoong Cho,&nbsp;<strong>Jong Bhak</strong>&sect; , and Jong-Soon Choi&sect;. BMC Bioinformatics, 13 Feb. 2008, 9:S1-S20.<br />
<br />
54)&nbsp;<strong>Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics</strong>. Yong-Doo Park, Daeui Park,&nbsp;<strong>Jong Bhak</strong>&nbsp;and Jun-Mo Yang, PROTEOMICS - CLINICAL APPLICATIONS, 2008, 2(3):290-300 (2008 Annual Reviews issue).<br />
<br />
53)&nbsp;<strong>Multi-resolution protein model</strong>. Deok-Soo Kim , Bohyung Lee , Chung-In Won , Donguk Kim, Joonghyun Ryu , Youngsong Cho, Chong-Min Kim, Sung-Hoon Lee, and&nbsp;<strong>Jonghwa Bhak</strong>. LECTURE NOTES IN COMPUTER SCIENCE, 2007, 4706(2):639-652.<br />
<br />
52)&nbsp;<strong>GS2PATH: A web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data</strong>. Jin Ok Yang, Charny Park, Byungwook Lee, Sangsoo Kim,<strong>Jong Bhak</strong>*, and Hyun Goo Woo. Bioinformation, Dec. 30, 2007, 2(5):194-196.<br />
<br />
51)&nbsp;<strong>Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases</strong>. Daeui Park, Jungwoo Lee, Giseok Yoon, Sungsam Gong, and&nbsp;<strong>Jong Bhak</strong>. Genomics &amp; Informatics, Dec. 2007, 5(4):196-199.<br />
<br />
50)&nbsp;<strong>CONSORF: a consensus prediction system for prokaryotic coding sequences</strong>. Sungsoo Kang, Sung-Jin Yang, Sangsoo Kim*, and&nbsp;<strong>Jong Bhak</strong>*. Bioinformatics, 8 Oct. 2007, 23(22):3088-3090.<br />
<br />
49)&nbsp;<strong>Genomic Distribution of Simple Sequence Repeats in&nbsp;<em>Brassica rapa</em></strong>. Chang Pyo Hong, Zhong Yun Piao, Tae Wook Kang, Jacqueline Batley, Tae-Jin Yang, Yoon-Kang Hur,&nbsp;<strong>Jong Bhak</strong>, Beom-Seok Park, David Edwards, and Yong Pyo Lim. Mol. Cells, 6 March 2007, 23(3):349-356.<br />
<br />
48)&nbsp;<strong>Impact of Transcriptional Properties on Essentiaity and Evolutionary Rate</strong>. Jung Kyoon Choi, Sang Cheol Kim, Jungmin Seo, Sangsoo Kim and&nbsp;<strong>Jong Bhak</strong>, Genetics, January 2007, 175:199-206.<br />
<br />
47)&nbsp;<strong>Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of&nbsp;<em>Brassica rapa</em></strong>. Yang TJ, Kim JS, Kwon SJ, Lim KB, Choi BS, Kim JA, Jin M, Park JY, Lim MH, Kim HI, Lim YP, Kang JJ, Hong JH, Kim CB,&nbsp;<strong>Bhak J</strong>, Bancroft I, Park BS. Plant Cell, 2006, 18(6):1339-1347.<br />
<br />
46)&nbsp;<strong>Parameter selection of pocket extraction algorithm using interaction interface</strong>. Kim Chong-Min, Won Chung-In, Ryu Joonghyun, Cho Cheol-Hyung,&nbsp;<strong>Bhak Jonghwa</strong><strong>,</strong>&nbsp;and Kim Deok-Soo. September 2006, Journal of Zhejiang University - Science A, 7(9):1492-1499.<br />
<br />
45)&nbsp;<strong>BioCC: An Openfree Hypertext Bio Community Cluster for Biology</strong>. Sungsam Gong, TaeHyung Kim, Jungsu Oh, Jekeun Kwon, SuAn Cho, Dan Bolser and&nbsp;<strong>Jong Bhak</strong>. Genomics &amp; Informatics, September 2006, 4(3):125-128.<br />
<br />
44)&nbsp;<strong>Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information</strong>. Sunghoon Lee, Byungwook Lee, Insoo Jang, Sangsoo Kim and<strong>Jong Bhak</strong>. Nucleic Acids Research, April 19, 2006, 34:W99-W103. (ISSN:0305-1048)<br />
<br />
43)&nbsp;<strong>Functional Annotation and Analysis of Korean Patented Biological Sequences Using Bioinformatics</strong>. Byung Wook Lee, Tae Hyung Kim, Seon Kyu Kim, Sang Soo Kim, Gee Chan Ryu, and&nbsp;<strong>Jong Bhak</strong>. Mol. Cells, March 2006, 21(2):269-275.<br />
<br />
42)&nbsp;<strong>HExDB: Human EXon DataBase for Alternative Splicing Pattern Analysis and predicted human gene number</strong>. Junghwan Park, Minho Lee, Tae Hyung Kim,&nbsp;<strong>Jong Bhak</strong>, Genomics &amp;Informatics, September 2005, 3(3):112-117.<br />
<br />
41)&nbsp;<strong>A protein domain interaction interface database: InterPare</strong>. Sungsam Gong, Changbum Park, Hansol Choi, Junsu Ko, Insoo Jang, Jungsul Lee, Dan M. Bolser, Donghoon Oh, Deok-Soo Kim, and&nbsp;<strong>Jong Bhak</strong>. BMC bioinformatics, 2005, 6:207. (ISSN:1471-2105)<br />
<br />
40)&nbsp;<strong>Euclidean Voronoi diagrams of 3D sphereds and applications to protein structure analysis</strong>. Deok-Soo KIM, Youngsong CHO, Donguk KIM, Sangsoo KIM,&nbsp;<strong>Jonghwa BHAK</strong>&nbsp;and Sung-Hoon LEE. Japan Journal of Industrial and Applied Mathematics, June 2005, 22(2):251-265. (ISSN:0916-7005)<br />
<br />
39)&nbsp;<strong>BioCovi: A visualization service for comparative genomics analysis</strong>, Jungsul Lee, Daeui Park and&nbsp;<strong>Jong Bhak</strong>. Genomics &amp; Informatics, 2005, 3(2):52-54.<br />
<br />
38)&nbsp;<strong>Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map)</strong>. Daeui Park, Semin Lee, Dan Bolser, Michael Schroeder, Michael Lappe, Donghoon Oh and&nbsp;<strong>Jong Bhak</strong>. Bioinformatics, May 2005, 21(15):3234-3240. (ISSN:1367-4803)<br />
<br />
37)&nbsp;<strong>PSIbase: a database of protein structural interactome map (PSIMAP)</strong>. Sungsam Gong, Giseok Yoon Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, and&nbsp;<strong>Jonghwa Bhak</strong>. Bioinformatics, 2005, 21(10):2541-2543. (ISSN:1367-4803)<br />
<br />
36)&nbsp;<strong>BioSubroutine: an open web server for bioinformatics algorithms and subroutines</strong>. Joowon Lee, Hana Kim, Wonhye Lee, Dongil Chung, and&nbsp;<strong>Jong Bhak</strong>. Genomics &amp; Informatics, March 2005, 3(1):35-38.<br />
<br />
35)&nbsp;<strong>Architecture of Basic Building Blocks in Protein and Domain Structural Interaction Networks</strong>. Hyun S. Moon,&nbsp;<strong>Jonghwa Bhak</strong>, Kwang H. Lee and Doheon Lee, Bioinformatics, 2005, 21(8):1479-1486. (ISSN:1367-4803)<br />
<br />
34)&nbsp;<strong>The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3&#39;untranslated regions</strong>. Hyeong Jun An, Doheon Lee, Kwang Hyung Lee and&nbsp;<strong>Jonghwa Bhak</strong>. BMC Genomics, 21 Dec. 2004, 5:97 p.1-5. (ISSN&nbsp;: 1471-2164)<br />
<br />
33)&nbsp;<strong>The Atom of Evolution</strong>.&nbsp;<strong>Jonghwa Bhak</strong>, Dan Bolser, Daeui Park, Yoobok Cho, Kiesuk Yoon, Semin Lee, SungSam Gong, Insoo Jang, Changbum park, Maryana Huston, and Hwanho Choi. Genomics &amp; Informatics, December 2004, 2(4):167-173.<br />
<br />
32)&nbsp;<strong>Using convex hulls to extract interaction interfaces from known structures</strong>. Panos Dafas, Dan Bolser, Jacek Gomoluch,&nbsp;<strong>Jong Park</strong><strong>,</strong>&nbsp;and Michael Schroeder. Bioinformatics, 2004, 20(10):1486-1490. (ISSN:1367-4803)<br />
<br />
31)&nbsp;<strong>High correlation between Alu elements and the conversion of 3 UTR of mRNAs processed pseudogenes</strong>. Hyeong Jun An, Dokyun Na, Doheon Lee, Kwang Hyung Lee, and&nbsp;<strong>Jonghwa Bhak</strong>. Genomics &amp; Informatics, June 2004 , 2(2):86-91.<br />
<br />
30)&nbsp;<strong>HPID: The Human Protein Interaction Database</strong>. Kyungsook Han, Byungkyu Park, Hyongguen Kim, Jinsun Hong and&nbsp;<strong>Jong Park</strong>. Bioinformatics, Apr. 29th, 2004, Vol. 20(15):2466-2470. (ISSN:1367-4803)<br />
<br />
29)&nbsp;<strong>Large scale co-evolution analysis of Protein Structural Interlogues using the global Protein Structural Interactome Map(PSIMAP)</strong>.Wankyu Kim, Dan M. Bolser, and&nbsp;<strong>Jong Park</strong>. Bioinformatics, 2004 Feb. 5th, 20(7):1138-1150. (ISSN&nbsp;: 1367-4803, Impact Factor&nbsp;: 5.742)<br />
<br />
28)&nbsp;<strong>Biological Network Evolution Hypothesis Applied to Protein Structural Interactome</strong>. Dan M. Bolser and&nbsp;<strong>Jong Park</strong>, Genomics &amp; Informatics, September 2003, Vol. 1(1) 7-19.<br />
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27)&nbsp;<strong>Challenges and New Approaches in Genomics and Bioinformatics</strong>.&nbsp;<strong>Jong Park</strong>&nbsp;and Kyungsook Han. Genomics &amp; Informatics, September 2003, Vol. 1(1) 1-6.<br />
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26)&nbsp;<strong>Visualisation and Graph-theoretic Analysis of a Large-scale Protein Structural Interactome</strong>. Dan M Bolser, Panos Dafas, Richard Harrington,&nbsp;<strong>Jong Park</strong><strong>,</strong>&nbsp;and Michael Schroeder. BMC Bioinformatics, 8 October 2003, 4;45 p.1-22. (ISSN:1471-2105)<br />
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25)&nbsp;<strong>Visualization and Analysis of Protein Interactions</strong>. Byonghyon Ju, Byungkyu Park,&nbsp;<strong>Jong P</strong><strong>ark</strong>, and Kyungsook Han. Bioinformatics, 2003, 19(2):317-318. (ISSN:1367-4803)<br />
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24)&nbsp;<strong>Predicting Protein Interactions in Human by Homologous Interactions in Yeast</strong>. Hyongguen Kim,&nbsp;<strong>Jong Park</strong>&nbsp;and Kyungsook Han. Lecture Notes in Computer Science, 2003, Vol.2637, 159-165. (ISSN:0302-9743)<br />
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23)&nbsp;<strong>Large Scale Statistical Prediction of Protein-Protein Interaction by Potentially Interacting Domain (PID) Pair</strong>. Wankyu Kim,&nbsp;<strong>Jong Park</strong><strong>,</strong>&nbsp;and Jungkeun Suh. Genome Informatics, 2002, 13: 42-50.<br />
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22)&nbsp;<strong>InterViewer: Dynamic Visualization of Protein-Protein Interactions</strong>. Kyungsook Han, Byonghyon Ju, and&nbsp;<strong>Jong Park</strong>. Lecture Notes in Computer Science, 2002, Vol.2528, 364-365. (ISSN:0302-9743)<br />
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21)&nbsp;<strong>Sequence similarity between stereocilin and otoancorin points to a unified mechanism for mechanotransduction in the mammalian inner ear</strong>. Luca Jovine,&nbsp;<strong>Jong Park</strong><strong>,</strong>&nbsp;and Paul M Wassarman. BMC Cell Biology, 2002, 3:28 (ISSN-NO:1471-2121)<br />
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20)&nbsp;<strong>Protein Interactions in the Whole Human Genome</strong>. Kyungsook Han, Byunggyu Park, Hyongguen Kim, Hongjin Kim, and&nbsp;<strong>Jong Park</strong>. Genome Informatics, 2002, Vol.13, 318-319 (Poster presentation).<br />
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19)&nbsp;<strong>An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server</strong>. Jaehyung Lee, Insong Koh,&nbsp;<strong>Jong Park</strong>. Genome Informatics, 2001, 12: 480-481.<br />
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18)&nbsp;<strong>Protein Classification Comparison Server</strong>. Junhyung Park, Sungryong Ryu, Cheolmin Kim, Insong Koh, and&nbsp;<strong>Jong Park</strong><strong>.</strong>&nbsp;Genome Informatics, 2001, 12: 350-351.<br />
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17)&nbsp;<strong>Conservation of Protein Interaction Network in Evolution</strong>.&nbsp;<strong>Jong Park</strong>&nbsp;and Dan Bolser. Genome Informatics, 2001, 12:135-140.<br />
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16)&nbsp;<strong>Generating protein interaction maps from incomplete data: application to fold assignment</strong>. Lappe M.,&nbsp;<strong>Park J</strong><strong>.</strong>, Niggemann O., and Holm L. Bioinformatics, 2001, Vol.17 Suppl.1, S149-S156. (ISMB 2001 paper printed in Bioinformatics) (ISSN:1367-4803)<br />
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15)&nbsp;<strong>Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast.&lt;strong&gt; Park J</strong>&lt;/strong&gt;, Lappe M. and Teichmann SA. Journal of Molecular Biology, 2001 Mar, 30;307(3):929-938. (ISSN&nbsp;: 0022-2836, Impact Factor&nbsp;: 5.542)<br />
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14)&nbsp;<strong>PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information</strong>. Qian J., Stenger B., Wilson CA., Lin J., Jansen R., Teichmann SA.,&nbsp;<strong>Park J</strong><strong>.</strong>, Krebs WG., Yu H., Alexandrov V., Echols N., and Gerstein M. Nucleic Acids Res., 2001, 29(8):1750-1764. (ISSN:0305-1048)<br />
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13)&nbsp;<strong>A fully automatic evolutionary classification of protein folds: Dali domain dictionary version 3</strong>. Dietmann S.,&nbsp;<strong>Park J</strong><strong>.</strong>, Notredame C., Heger A., Lappe M., and Holm L. Nucleic Acids Res., 2001 Jan, 29(1):55-57. (ISSN:0305-1048)<br />
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12)&nbsp;<strong>Estimating the significance of sequence order in protein secondary structure prediction</strong>.&nbsp;<strong>Jong Park</strong>, Sabine Dietmann, Andreas Heger, and Liisa Holm. Bioinformatics, 2000, 16(11):978-987. (for Issue 9) (ISSN:1307-4803)<br />
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11)&nbsp;<strong>Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL</strong>. Sarah A. Teichmann, Cyrus Chothia, George M. Church, and&nbsp;<strong>Jong Park</strong>, Bioinformatics, 2000, 16(2), 117-124. (ISSN:1367-4803)<br />
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10)&nbsp;<strong>DaliLite workbench for protein structure comparison</strong>. Liisa Holm and&nbsp;<strong>Jong Park</strong>. Bioinformatics, 2000, Vol 16. Issue 6, p566-567. (ISSN:1367-4803)<br />
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9)&nbsp;<strong>RSDB: representative sequence databases with high information content</strong>.&nbsp;<strong>Jong Park</strong>, Liisa Holm, Andreas Heger, and Cyrus Chothia. Bioinformatics, 2000 May, Vol 16. Issue No. 5. 458-464. (ISSN:1367-4803)<br />
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8)&nbsp;<strong>Sequence Search Algorithm Assessment and Testing Toolkit (SAT)</strong>.&nbsp;<strong>Jong Park</strong>, Liisa Holm, and Cyrus Chothia. Bioinformatics, 2000, Vol 16. No.2, 104-110. (ISSN:1367-4803)<br />
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7)&nbsp;<strong>Sequence Comparisons Using Multiple Sequences Detect Three Times as Many Remote Homologues as Pairwise Methods</strong>.&nbsp;<strong>Park J</strong><strong>.</strong>, Karplus K., Barrett C., Hughey R., Haussler D., Hubbard T. and Chothia C., Journal of Molecular Biology, 11, Dec, 1998, 284(4):1201-1210. (ISSN:0022-2836)<br />
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6)&nbsp;<strong>Structural assignments to the proteins of Mycoplasma genitalium show that they have been formed by extensive gene duplications and domain rearrangements</strong>. Sarah Teichmann,&nbsp;<strong>Jong Park</strong><strong>,</strong>and Cyrus Chothia, PNAS, 8, Dec, 1998, 95(25):14658-14663.<br />
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5)&nbsp;<strong>DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins</strong>.&nbsp;<strong>Jong Park</strong>&nbsp;and Sarah Teichmann. Bioinformatics, 1998, 14(2):144-50. (ISSN:1367-4803)<br />
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4)&nbsp;<strong>Intermediate sequences find distant sequence homologues</strong>.&nbsp;<strong>Jong Park</strong>, Sarah A. Teichmann, Tim Hubbard and Cyrus Chothia. Journal of Molecular Biology, 17, Oct, 1997, 273(1):349-354. (ISSN:0022-2836)<br />
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3)&nbsp;<strong>Protein structure prediction: Playing the fold</strong>. Hubbard T,<strong>&nbsp;Park J</strong><strong>.</strong>, Lahm A., Leplae R. and Tramontano A. TRENDS IN BIOCHEMICAL SCIENCES, 1996 Aug, 21(8):279-281. (ISSN:0968-0004)<br />
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2)&nbsp;<strong>Update on protein structure prediction: results of the IRBM 1995 workshop</strong>. Hubbard T., Tramontano A., Barton G., Jones D., Sippl M., Valencia A., Lesk A., Moult J., Rost B., Sander C., Schneider R., Lahm A., Leplae R., Buta C., Eisenstein M., Fjellstr^m O., Floeckner H., Grossman G., Hansen J., Helmer Citterich M., Joergensen F.S., Marchler-Bauer A., Osuna J.,&nbsp;<strong>Park J</strong><strong>.</strong>, Reinhardt A., Ribas de Pouplana L., Rojo-Dominguez A., Saudek V., Sinclair J., Sturrock S., Venclovas C., Vinals C. 1996, Folding and Design, 1(3), 55-63. (ISSN-NO:1359-0278)<br />
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1)&nbsp;<strong>Fold recognition and ab initio structure predictions using Hidden Markov Models and&nbsp;<a href="http://jongbhak.com/index.php?title=Beta&amp;action=edit&amp;redlink=1" title="Beta (page does not exist)">beta</a>-strand pair potentials</strong>. Tim Hubbard and&nbsp;<strong>Jong Park</strong>.&nbsp;<em>Proteins</em>, 1995 Nov, 23(3):398-402.</p>
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