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UGENE link fixed
</font>See also: [http://biosoftware.org Biosoftware.org]<br />
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<td><a href="http://www.bioexplorer.net/toolbar/"><font color="#810081">Bioexplorer Toolbar</font></a></td>
<td> An easy toolbar for NCBI databases</td>
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<td>[[BioJava]]</td>
<td> Biological module for Java programming language.</td>
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<td><a href="http://www.arc.unm.edu/~aroberts/main/free.htm"><font color="#810081">Biotech Resource</font></a><font color="#c0c0c0"> at UNM.edu</font></td>
<td> <font size="2" color="#000000" size="2">Free Software that is Relevant to the Molecular Biology and Structural Biology Fields</font></td> </tr> <tr> <td>[[BioPerl]]</td> <td> BioPerl: biological module for Perl programming language.</td> </tr> <tr> <td>[[BioPHP]]</td> <td> BioPHP: biological module for PHP programming language.</td> </tr> <tr> <td>[[BioPython]]</td> <td> BioPython: biological module for Python programming language.</td> </tr> <tr> <td>[[BioRuby]]</td> <td> BioRuby: biological module for Ruby programming language</td>
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<td><a target="new" href="http://www.psc.edu/biomed/genedoc/" target="new"><font color="#810081">GeneDoc</font></a></td>
<td><font color="#000000"> Multiple sequence alignment editor, analyzer & shading utility for windows</font></td>
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<td><a href="http://www.sequenom.com/genetic_systems/software/software_rt.php" title="Enhanced with automated teaching methods, MassARRAY RT software automatically aligns and calibrates SEQUENOM's SpectroCHIP and provides smart rastering of DNA samples in real time without user intervention. Smart rastering dramatically improves sample efficiency and reduces individual analysis times for improved data quality and sample throughput." href="http://www.sequenom.com/genetic_systems/software/software_rt.php"><font size="-1">MassARRAY™ RT Software (Sequenom)</font></a> </td>
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<td><font color="#000000"><a target="new" href="http://www.gsf.de/biodv/matinspector.html" target="new">MatInspector</a></font></td>
<td><font color="#000000"> Detection of transcription factor binding sites</font></td>
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<td style="VERTICALvertical-ALIGNalign: top;"><a href="http://www.drive5.com/muscle/">MUSCLE</a></td> <td style="VERTICALvertical-ALIGNalign: top;"> Protein Multiple Sequence Alignment Software</td>
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<td style="VERTICALvertical-ALIGNalign: top;"><a href="http://chum.gs.washington.edu/PolyPhred.html">PolyPhred</a></td> <td style="VERTICALvertical-ALIGNalign: top;"> Compares traces to identify heterozygous sites for SNPs</td>
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<td><font color="#000000"><a target="new" href="http://compbio.ornl.gov/structure/prospect/" target="new">Prospect</a></font></td>
<td><font color="#000000"> A threading-based protein structure prediction system</font></td>
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<td><font color="#000000"><a target="new" href="http://taxonomy.zoology.gla.ac.uk/rod/treeview.html" target="new">TreeView</a></font></td>
<td><font color="#000000">Tree drawing software for Apple Macintosh and Windows</font></td>
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<td><a href="http://www.ualberta.ca/~stothard/javascript/d_load.html">Sequence Manipulation</a></td>
<td> Free suite of sequence manipulation tools</td>
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<td>[http://gi.biotec.or.th/resources/vartree VarTree]</td>
<td> A Decision Tree Based Tool for Analyzing Gene-Gene Interaction</td>
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<td><a href="http://blast.wustl.edu/">WU-BLAST</a> </td>
<td> Washington University BLAST archives</td>
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<td>[http://ugene.unipro.ru UGENE]<br />
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<td>Integrated visual environment for popular command line bioinformatics tools like HMMER, MUSCLE, BLAST, repeats and restriction enzymes analysis etc.</td>
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