Changes

<p><span style="font-size:20px"><strong>Box jellyfish (Cubozoa) genome</strong></span></p>

<p><span style="font-size:16px"><strong>1. Raw data and project folder information</strong></span></p>

<li><span style="font-size:16px">Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/</span></li> <li><span style="font-size:16px">Raw data information:</span>

<li><span style="font-size:16px">Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata</span></li> <li><span style="font-size:16px">Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206</span></li> <li><span style="font-size:16px">RNA 2 tissue:</span>

<li><span style="font-size:16px">Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601</span></li> <li><span style="font-size:16px">Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT</span></li>

<p><span style="font-size:16px"><strong>2. Paper status</strong>: Not yet published (Analysis in progress)</span></p>

<p><span style="font-size:16px"><strong>3. Analysis result</strong></span></p>

<li><span style="font-size:16px">Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat</span></li> <li><span style="font-size:16px">Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa <table border="0" cellpadding="0" cellspacing="0" style="width:102.44%"> <tbody> <tr> <td style="height:22px; width:26.0%"> <p><strong>Read correction cutoff</strongspan><br /p> <br /td> <td colspanimg alt="5" stylesrc="height:22px; width:74.0%"> <p><strong>11K</strong></p> </td> </tr> <tr> <td style="height:22px; width:26.0%"> <p><strong>Assembly used read cutoff<ckfinder/strong><userfiles/p> <images/td> <td style="height:22px; width:156_assembly_stat.2%PNG"> <p><strong>11K</strong></p> </td> <td style="height:22px306px; width:15.2%1055px"> <p><strong>12K</strong><br /p> <br /td> <td span style="height:22px; width:15.2%"> <p><strong>13K</strong></p> </td> <td style="height:22px; width:14.18%"> <p><strong>14K</strong></p> </td> <td style="height:22px; width:14.18%"> <p><strong>15K</strong></p> </td> </tr> <tr> <td style="height:21px; width:26.0%"> <p># of sequences</p> </td> <td style="height:21px; width:15.2%"> <p>10240 ea</p> </td> <td style="height:21px; width:15.2%"> <p>9396 ea</p> </td> <td style="heightfont-size:21px; width:15.2%16px"> <p>8587 ea</p> </td> <td style="height:21px; width:14.18%"> <p>7594 ea</p> </td> <td style="height:21px; width:14.18%"> <p>6786 ea</p> </td> </tr> <tr> <td style="height:21px; width:26.0%"> <p>Total bases</p> </td> <td style="height:21px; width:15.2%"> <p>1284987375 bp</p> </td> <td style="height:21px; width:15.2%"> <p>1166025763 bp</p> </td> <td style="height:21px; width:15.2%"> <p>1045513771 bp</p> </td> <td style="height:21px; width:14.18%"> <p>909583732 bp</p> </td> <td style="height:21px; width:14.18%"> <p>775344685 bp</p> </td> </tr> <tr> <td style="height:21px; width:26.0%"> <p>Longest length</p> </td> <td style="height:21px; width:15.2%"> <p>1333152 bp</p> </td> <td style="height:21px; width:15.2%"> <p>997040 bp</p> </td> <td style="height:21px; width:15.2%"> <p>1183633 bp</p> </td> <td style="height:21px; width:14.18%"> <p>1116149 bp</p> </td> <td style="height:21px; width:14.18%"> <p>960575 bp</p> </td> </tr> <tr> <td style="height:21px; width:26.0%"> <p>Shortest length</p> </td> <td style="height:21px; width:15.2%"> <p>11522 bp</p> </td> <td style="height:21px; width:15.2%"> <p>12380 bp</p> </td> <td style="height:21px; width:15.2%"> <p>13566 bp</p> </td> <td style="height:21px; width:14.18%"> <p>14660 bp</p> </td> <td style="height:21px; width:14.18%"> <p>15238 bp</p> </td> </tr> <tr> <td style="height:21px; width:26.0%"> <p><strong>N50</strong></p> </td> <td style="height:21px; width:15.2%"> <p><strong>183Due to the low depth PacBio raw data,372</strong></p> </td> <td style="height:21px; width:15.2%"> <p><strong>181,743</strong></p> </td> <td style="height:21px; width:15.2%"> <p><strong>177,304</strong></p> </td> <td style="height:21px; width:14.18%"> <p><strong>172,930</strong></p> </td> <td style="height:21px; width:14.18%"> <p><strong>161,564</strong></p> </td> </tr> <tr> <td style="height:21px; width:26.0%"> <p>GC contents</p> </td> <td style="height:21px; width:15.2%"> <p>39.07%</p> </td> <td style="height:21px; width:15.2%"> <p>39.07%</p> </td> <td style="height:21px; width:15.2%"> <p>39.08%</p> </td> <td style="height:21px; width:14.18%"> <p>39.07%</p> </td> <td style="height:21px; width:14PromethION long read sequencing was added and is currently being assembled by Hui-su Kim.18%"> <p>39.07%</pspan> </td> </tr> <tr> <td style="height:22px; width:26.0%"> <p>N bases (gaps)</p> </td> <td style="height:22px; width:15.2%"> <p>0.00%</p> </td> <td style="height:22px; width:15.2%"> <p>0.00%</p> </td> <td style="height:22px; width:15.2%"> <p>0.00%</p> </td> <td style="height:22px; width:14.18%"> <p>0.00%</p> </td> <td style="height:22px; width:14.18%"> <p>0.00%</p> </td> </tr> </tbody> </table> </li>