Hak-Min Kim BOX

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Box jellyfish (Cubozoa) genome


 

1. Raw data and project folder information

  1. Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/
  2. Raw data information:
    1. Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata
    2. Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206
    3. RNA 2 tissue:
      1. Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601
      2. Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT

 

2. Paper status: Not yet published (Analysis in progress)


 

3. Analysis result

  1. Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat
  2. Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa

    Read correction cutoff

    11K

    Assembly used read cutoff

    11K

    12K

    13K

    14K

    15K

    # of sequences

    10240 ea

    9396 ea

    8587 ea

    7594 ea

    6786 ea

    Total bases

    1284987375 bp

    1166025763 bp

    1045513771 bp

    909583732 bp

    775344685 bp

    Longest length

    1333152 bp

    997040 bp

    1183633 bp

    1116149 bp

    960575 bp

    Shortest length

    11522 bp

    12380 bp

    13566 bp

    14660 bp

    15238 bp

    N50

    183,372

    181,743

    177,304

    172,930

    161,564

    GC contents

    39.07%

    39.07%

    39.08%

    39.07%

    39.07%

    N bases (gaps)

    0.00%

    0.00%

    0.00%

    0.00%

    0.00%