Difference between revisions of "Hak-Min Kim NNO"

Revision as of 16:07, 20 August 2019

Nomura’s jellyfish genome

1. Raw data and project folder information

2. Paper status: Published (The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation. BMC biology, 2019)

3. Analysis result

Assembly result: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/Final_assembly
Annotation result
1. Gene set: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/Final_GeneSet
2. Repeat result: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/10.RepeatAnnotation_9K/Repeat_9K/Report/all.gff
3. Domain annotation: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/Domain_ExpansionContraction/Domain/NemNom.pep.interproscan.tsv
Orthologous gene cluster & gene family expansion and contraction: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/GeneFamily_ExpansionContraction_final_20170124
Hox genes: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/Specific_topic_gene_examine/HoxGene_new/Final
Wnt genes: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/Specific_topic_gene_examine/Wnt_family
Retinoid acid receptor: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/Specific_topic_gene_examine/Retinoid_X_receptor
Venom candidate: /BiO/Research/Project1/TGI-Jellyfish-Genome-2015-04/Venom_with_hmmer_AurAur

4. Methods

All methods are described in the method & material section of the published article.

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-<p><span style="font-size:16px"><strong>2. Paper status</strong>: Published (The genome of the giant Nomura&#39;s jellyfish sheds light on the early evolution of active predation. <em>BMC biology</em>, 2019)</span></p>
+<p><span style="font-size:16px"><strong>2. Paper status</strong>: Published (<a href="https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-019-0643-7">The genome of the giant Nomura&#39;s jellyfish sheds light on the early evolution of active predation.</a> <em>BMC biology</em>, 2019)</span></p>
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