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<a href="http://www.embl-heidelberg.de/srs/srsc?-info||ALI"><strong>3D-ALI</strong></a> - Database relating Proteins Structures and Sequences (see <a href="gopher://s-crim1.dl.ac.uk/00/EMBnet%20Bioinformation%20Resource%20UK/Data%20%26%20Software/databases/3d_ali/3d_ali.doc"><strong>Documentation</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br/> <a href="http://www.embl-heidelberg.de/aaa.html"><strong>AA Analysis</strong> </a> - Protein Identification in SwissProt and PIR using Amino Acid Composition at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br /><br /> <a href="http://expasy.hcuge.ch/ch2d/aacompi.html"><strong>AA CompIdent</strong></a> - Protein Identification in SwissProt using Amino Acid Composition at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br /><br /> <a href="http://expasy.hcuge.ch/ch2d/aacsim.html"><strong>AA CompSim</strong></a> - Compare the Amino Acid Composition of a SwissProt Entry with Other Entries at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br /><br /> <a href="http://chait-sgi.rockefeller.edu/cgi-bin/sequence/AA"><strong>AA Sequence Analysis</strong></a> - Multiple Analysis of a Native or Modified Amino Acid Sequence at <a href="http://www.rockefeller.edu/ru.home.html">Rockefeller U.</a> <br /><br /> <a href="http://www.biochem.ucl.ac.uk/~martin/abs/seqtest.html"><strong>AbCheck</strong></a> - Test an Antibody Sequence Against the Kabat Database at <a href="http://www.biochem.ucl.ac.uk/">U. College-London</a>, UK <br /><br /> <a href="http://genome.eerie.fr/fasta/align-query.html"><strong>ALIGN</strong></a> - Optimal Global Alignment of Two Sequences with No Short-cuts at <a href="http://genome.eerie.fr/home.html">EERIE-Nimes</a>, France and <a href="http://speedy.mips.biochem.mpg.de/www/programs/align.html"><strong>Align</strong></a> at <a href="http://speedy.mips.biochem.mpg.de/">MIPS</a>, Germany <br /><br /> <a href="http://cbrg.inf.ethz.ch/subsection3_1_1.html"><strong>AllAll</strong></a> - Relationships in a Set of Related Peptides at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br /><br /> <a href="http://cbrg.inf.ethz.ch/subsection3_1_2.html"><strong>AllAllDB</strong></a> - Search the All-Against-All Database of SwissProt at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br /><br /> <a href="http://geoff.biop.ox.ac.uk/servers/amas_server.html"><strong>AMAS</strong></a> - Analysis of Protein Multiple Sequence Alignments at <a href="http://geoff.biop.ox.ac.uk/">U. Oxford</a>, UK <br /><br /> <a href="http://www.embl-heidelberg.de/argos/ASC.21/asc2.html"><strong>ASC</strong></a> - Analytic Surface Calculation of PDB Protein Structures at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br /><br /> <a href="http://mips11.mips.biochem.mpg.de/www/programs/atlas_per.html"><strong>ATLAS</strong></a> - Search DNA and Protein Sequence Databases at <a href="http://speedy.mips.biochem.mpg.de/">MIPS</a>, Germany <br /><br /> <a href="http://kiwi.imgen.bcm.tmc.edu:8088/search-launcher/launcher.html"><strong>BCM Search Launcher</strong></a> at <a images="" alt="(W3)" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="></a><br /><br /><a images="" alt="(W3)" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="> </a><a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/protein-search.html"><strong>BEAUTY</strong></a> - BLAST Enhanced Alignment Utility <a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/Help/beauty.html"><strong>(see Documentation)</strong></a> at <a href="http://www.bcm.tmc.edu/">Baylor College of Medicine</a> <br /><br /> <a href="http://cammsg3.caos.kun.nl:8000/srs/srsc?-info+BERLIN"><strong>BERLIN</strong></a> - RNA Databank of 5S rRNA and 5S rRNA Gene Sequences at <a href="http://cammsg3.caos.kun.nl:8000/">CAOS/CAMM</a>, The Netherlands <br /><br /> <a href="http://sgbcd.weizmann.ac.il/Bic/ExecAppl.html"><strong>BIOACCELERATOR</strong></a> at <a href="http://bioinformatics.weizmann.ac.il:70/">Weizmann Institute of Science</a>, Israel <br /><br /> <a images="" alt="!New!" href="http://www.ocms.ox.ac.uk/~birney/cusi/biocusi.html%3E%3Cb%3EbioCUSI%3C/b%3E%3C/a%3E%3Cimg%20src=">- Multiple Access to Biological Servers at </a><a href="http://www.ocms.ox.ac.uk/">OCMS-Oxford</a> <br /><br /> <a href="ftp://pdb.pdb.bnl.gov/user_group/biological_units"><strong>Biological Units</strong></a> - Expanded PDB Entries with Full Biological Units at <a href="http://suntid.bnl.gov:8080/bnl.html">Brookhaven National Laboratory</a> <br /><br /> <a href="http://www.ocms.ox.ac.uk/~birney/palette.html"><strong>Biologist's Search Palette</strong></a> - Collection of Search Engines for Biological Databases at <a href="http://www.ocms.ox.ac.uk/">Oxford U.</a>, UK <br /><br /> <a href="http://www.ncbi.nlm.nih.gov/Recipon/bs_seq.html"><strong>BLAST</strong></a> - Basic Local Alignment Research Tool at <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a>, <a href="http://swarmer.stanford.edu/cgi-bin/blastq-form?options=simple"><strong>BLAST</strong></a> (hiv, vector, etc) at <a href="http://motif.stanford.edu/">Stanford U.</a>, <a href="http://www.genome.ad.jp/SIT/BLAST.html"><strong>BLAST</strong></a> at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan, <a href="http://genome.eerie.fr/blast/blast-query.html"><strong>BLAST</strong></a> at <a href="http://genome.eerie.fr/home.html">EERIE-Nimes</a>, France, <a href="http://www.crihan.fr/www/blast.html"><strong>BLAST</strong></a> at <a href="http://www.crihan.fr/">CRIHAN</a>, France <a href="http://dot.imgen.bcm.tmc.edu:9331/cgi-bin/seq-search/blast_form_local.pl"><strong>BLAST</strong></a> (with Entrez and SRS Links) at <a href="http://gc.bcm.tmc.edu:8088/">Baylor College of Medicine</a> and <a href="http://ulrec3.unil.ch/software/EPFLBLAST_form.html"><strong>BLAST</strong></a> at <a href="http://www.epfl.ch/">EPFL</a>, Switzerland <br /><br /> <a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/Option/blastpat.html"><strong>BLASTPAT</strong></a> - BLAST-based Pattern Database Search (see <a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/Help/blastpat.html"><strong>Documentation</strong></a>) at <a href="http://gc.bcm.tmc.edu:8088/">Baylor College of Medicine</a> <br /><br /> <a href="http://www.embl-heidelberg.de/searches/blitz_input.html"><strong>BLITZ</strong></a> (see <a href="http://www.ebi.ac.uk/searches/blitz_doc.html"><strong>Documentation</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> and <a href="http://www.ebi.ac.uk/searches/blitz_input.html"><strong>BLITZ</strong></a> at <a href="http://www.ebi.ac.uk/">EBI</a>, UK <br /><br /> <a href="http://www.blocks.fhcrc.org/"><strong>BLOCKS</strong></a> - Database of Highly Conserved Regions in Proteins and <a href="gopher://klaatu.fhcrc.org/77/.indexes/.blocksindex/blocksindex"><strong>BLOCKS-WAIS</strong></a> at <a href="gopher://klaatu.fhcrc.org/">Fred Hutchinson Cancer Research Center</a>, <a href="http://www.embl-heidelberg.de/srs/srsc?-info||BLOCKS"><strong>BLOCKS</strong></a> at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> and <a href="http://www.public.iastate.edu/~pedro/blocks_query.html"><strong>BLOCKS-Search</strong></a> w/ search from <a href="http://www.cc.iastate.edu/welcome.html">Iowa State</a> <br /><br /> <a href="http://bimas.dcrt.nih.gov/sql/BMRBgate.html"><strong>BioMagResBank</strong></a> - A Database of NMR-Derived Protein Structures at <a href="http://bimas.dcrt.nih.gov/">BIMAS-NIH</a> <br /><br /> <a href="http://genome.cs.unc.edu/online.html"><strong>BioSCAN</strong></a> - Biological Sequence Comparative Analysis at <a href="http://genome.cs.unc.edu/">U. North Caroline</a> <br /><br /> <a href="http://ibm4.carb.nist.gov:4400/bmcd/bmcd.html"><strong>BMCD</strong></a> - Biological Macromolecule Crystallization Database at <a href="http://ibm4.carb.nist.gov:4400/carb.html">CARB</a> <br /><br /> <a href="http://ulrec3.unil.ch/software/BOX_form.html"><strong>BOXSHADE</strong></a> - Pretty Printing and Shading of Multiple-Sequence Alignments at <a href="http://ulrec3.unil.ch/">ISREC</a>, Switzerland <br /><br /> <a href="http://www.biochem.ucl.ac.uk/bsm/cath/CATHintro.html"><strong>CATH</strong></a> - Protein Structure Classification at <a href="http://www.biochem.ucl.ac.uk/">UCL-London</a>, UK <br /><br /> <a href="http://ibc.wustl.edu/msa/clustal.cgi"><strong>CLUSTALW</strong></a> - Multiply Sequence Alignments at <a href="http://ibc.wustl.edu/">IBC-Washington U.</a> <br /><br /> <a href="http://alces.med.umn.edu/cuse.html"><strong>Codon Usage</strong></a> - Analysis of Different ORFs in a Gene Sequence at <a href="http://www.umn.edu/">U. Minnesota</a> <br /><br /> <a href="http://ulrec3.unil.ch/software/COILS_form.html"><strong>Coils</strong></a> - Prediction of Coiled Coil Regions in Protein Sequences at <a href="http://ulrec3.unil.ch/">ISREC</a>, Switzerland <br /><br /> <a href="http://ben.vub.ac.be/srs/srsc?-info+CPGISLE"><strong>CpGIsle</strong></a> - CpG Islands Database at <a href="http://ben.vub.ac.be/">BEN</a>, Belgium <br /><br /> <a href="http://cbrg.inf.ethz.ch/subsection3_1_7.html"><strong>Darwin</strong></a> - Data Analysis and Retrieval With Indexed Nucleotide/Peptide Sequences at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br /><br /> <a href="http://www.ncbi.nlm.nih.gov/dbEST/index.html"><strong>dbEST</strong></a> - Database of Expressed Sequence Tags at <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a> <br /><br /> <a href="http://www.genome.ad.jp/dbget/dbget.html"><strong>DBGET</strong></a> - Integrated Database Retrieval System (w/ <a href="http://www.genome.ad.jp/dbget/dbget.links.html"><strong>diagram links</strong></a>) at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan <br /><br /> <a href="gopher://gopher.nig.ac.jp/7waissrc%3a/DDBJ_Gopher_WAIS/DNA_seq_index_search.src"><strong>DDBJ</strong></a> - DNA Database of Japan at <a href="http://www.nig.ac.jp/">National Institute of Genetics</a>, Japan <br /><br /> <a href="http://alces.med.umn.edu/rawdot.html"><strong>Dot Plot</strong></a> - Compare a DNA Sequence with Itself at <a href="http://www.umn.edu/">U. Minnesota</a> <br /><br /> <a href="http://www.nih.gov/molecular_modeling/drugbank.html"><strong>DrugBank</strong></a> - Three-dimensional Drug Structure Databank at <a href="http://www.nih.gov/">NIH</a> <br /><br /> <a href="http://www.embl-heidelberg.de/srs/srsc?-info+DSSP"><strong>DSSP</strong></a> - Database of Secondary Structure of Proteins from PDB (see <a href="http://www.sander.embl-heidelberg.de/dssp/descrip.html"><strong>Documentation</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br /><br /> <a href="http://www.gdb.org/Dan/proteins/ec-enzyme.html"><strong>EC Enzyme</strong></a> at <a href="http://www.gdb.org/hopkins.html">Johns Hopkins</a> and <a href="http://www.genome.ad.jp/htbin/show_ECtable"><strong>EC Number Table</strong></a> at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan and <a href="http://specter.dcrt.nih.gov:8004/Enzymes/enzymes.html"><strong>GenoBase Enzyme Index</strong></a> at <a href="http://www.nih.gov/">NIH</a> <br /><br /> <a href="http://susi.bio.uni-giessen.de/usr/local/www/html/ecdc.html"><strong>ECDC</strong></a> - <em>E. coli</em> Database Collection at <a href="http://www.uni-giessen.de/">Uni-Gießen</a>, Germany <br /><br /> <a href="gopher://biox.embnet.unibas.ch:13021/77/.index/embl/index"><strong>EMBL</strong></a> - Nucleotide Sequence Database and <a href="gopher://biox.embnet.unibas.ch:13021/77/.index/xembl/index"><strong>EMBL-New Entries</strong></a> at <a href="http://www.ch.embnet.org/">EMBnet-Basel</a> <br /><br /> <a href="http://www.ebi.ac.uk/srs/srsc?-info||EMNEW"><strong>EMNEW</strong></a> - Index of New EMBL Sequences at <a href="http://www.ebi.ac.uk/">EBI</a>, UK <br /><br /><a href="http://specter.dcrt.nih.gov:8004/Compound/compound_toc_by_name.html"><strong>EMP Compound</strong></a> and <a href="http://specter.dcrt.nih.gov:8004/Pathway/pathway_toc_by_name.html"><strong>EMP Pathways</strong></a> - Selkov Enzyme and Metabolic Pathway (EMP) Database at <a href="http://www.nih.gov/">NIH</a> <br /><br /> <a href="http://www.mcs.anl.gov/home/towell/metabhome.html"><strong>EMP Metabolic Pathways</strong></a> - Navigation in Metabolic Pathways from <a href="http://www.mcs.anl.gov/home/compbio/default.html">MCS-Computational Biology</a> at <a href="http://www.anl.gov/">Argonne National Laboratory</a> <br /><br /> <a href="http://www.ncbi.nlm.nih.gov/Search/Entrez/index.html"><strong>ENTREZ</strong></a> - Protein and Nucleotide Database (see <a href="http://atlas.nlm.nih.gov:5700/WWW2/WWW2_paper2.html"><strong>Documentation</strong></a>) at <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a> <br /><br /> <a href="http://expasy.hcuge.ch/sprot/enzyme.html"><strong>ENZYME</strong></a> - The Enzyme Data Bank at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br /><br /> <a href="http://www.biochem.ucl.ac.uk/bsm/enzymes/index.html"><strong>Enzyme Structures Database</strong></a> - Structures of Enzymes Deposited in the PDB at <a href="http://www.biochem.ucl.ac.uk/">UCL-London</a>, UK <br>
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<a href="http://expasywww.hcugeembl-heidelberg.chde/ch2dsrs/aacompisrsc?-id||781260221_129.186.html4.14||-info||EPD"><strong>AA CompIdentEPD</strong></a> - Protein Identification in SwissProt using Amino Acid Composition Eucaryotic Promoter Database at <a href="http://expasywww.embl-heidelberg.de/">EMBL-Heidelberg</a>, Germany and <a href="http://www.genome.ad.jp/htbin/bfind_epd"><strong>EPD</strong></a> at <a href="http://www.genome.hcugead.chjp/">ExPASyGenomeNet</a>, SwitzerlandJapan <br>
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<a href="http://expasybioslave.hcugeuio.chno:8001/ch2dsrs/aacsim.htmlsrsc?-info+EPO"><strong>AA CompSimEPO</strong></a> - Compare the Amino Acid Composition of European Patent Office Nucleotide Database at <a href="http://www.no.embnet.org/">BiO/U. Oslo</a>, Norway and <a href="gopher://gopher.csc.fi/7waissrc%3a/tiede/BioBox/bionic/.epo.src"><strong>EPO</strong></a SwissProt Entry with Other Entries > at <a href="http://expasywww.hcugecsc.chfi/CSC_english.html">ExPASyCSC</a>, SwitzerlandFinland <br>
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<a href="http://chaitwww.ebi.ac.uk/searches/fasta.html"><strong>FASTA</strong></a> -sgiCompare a Nucleic Acid Sequence to Nucleotide Sequence Databases (w/ updates) at <a href="http://www.ebi.rockefellerac.uk/">EBI</a>, UK, <a href="http://swarmer.stanford.edu/cgi-bin/sequencefastaq-form?options=simple"><strong>FASTA</strong></a> (Berlin, Vectorbank, etc) at <a href="http://motif.stanford.edu/AA">Stanford U.</a>, <a href="http://genome.eerie.fr/fasta/fasta-query.html"><strong>AA Sequence AnalysisFASTA</strong></a> at <a href="http://genome.eerie.fr/home.html">EERIE- Multiple Analysis of Nimes</a Native or Modified Amino Acid Sequence at >, France and <a href="http://www.rockefellercrihan.edufr/www/ru.homefasta.html">Rockefeller U<strong>FASTA</strong></a> at <a href="http://www.crihan.fr/">CRIHAN</a>, France <br>
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<a href="http://wwwdot.biochemimgen.uclbcm.actmc.ukedu:9331/~martinseq-search/absOptions/seqtestfastpat.html"><strong>AbCheckFASTPAT</strong></a> - Test an Antibody Sequence Against the Kabat FASTA-based Pattern Database at Search (see <a href="http://wwwdot.biochemimgen.uclbcm.actmc.ukedu:9331/seq-search/Help/fastpat.html">U<strong>Documentation</strong></a>) at <a href="http://gc. bcm.tmc.edu:8088/">Baylor College-Londonof Medicine</a>, UK <br>
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<a href="http://genomemorgan.eerieharvard.fredu/fasta/align-query.html"><strong>ALIGNFlyBase</strong></a> - Optimal Global Alignment of Two Sequences with No Short-cuts at <a href="http://genome.eerie.fr/home.html">EERIE-Nimes</a>, France Genetic and Molecular Database for <a href="http://speedy.mips.biochem.mpg.de/www/programs/align.html"><strongem>AlignDrosophila</strong></aem> at <a href="http://speedy.mipswww.biochemharvard.mpg.deedu/">MIPSHarvard U.</a>, Germany <br>
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<a href="http://cbrgwww.infembl-heidelberg.ethz.chde/srs/subsection3_1_1.htmlsrsc?-info||FSSP"><strong>AllAllFSSP</strong></a> - Relationships in a Set Database of Families of Related Peptides Structurally Similar Proteins derived from PDB at <a href="http://cbrgwww.inf.ethzembl-heidelberg.chde/">ETHEMBL-ZürichHeidelberg</a>, Switzerland <br>
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<a href="http://cbrgwww.infabc.ethz.chhu/subsection3_1_2blast.html"><strong>AllAllDBFTHOM</strong></a> - Search the All-Against-All Database of SwissProt Compare Protein Domain Homology at <a href="http://cbrgwww.infabc.ethz.chhu/">ETH-ZürichABC</a>, SwitzerlandHungary <br>
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<a href="http://geoffgdbwww.biopgdb.ox.ac.ukorg/servers/amas_server.html"><strong>AMASGDB</strong></a> - Analysis of Protein Multiple Sequence Alignments Human Genome Data Base at <a href="http://geoffwww.biopgdb.oxorg/hopkins.ac.uk/html">U. OxfordJohns Hopkins</a>, UK <br>
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<a href="http://ncbi.nlm.nih.gov:2555/r_genbank2.html"><strong>GenBank Database</strong></a> (+Updates) at <a href="http://www.embl-heidelbergncbi.nlm.nih.degov/argos">NCBI</ASCa> and <a href="http://ibc.21wustl.edu/asc2wu_fetch.html"><strong>ASCGenBank-Fetch</strong></a> - Analytic Surface Calculation of PDB Protein Structures at <a href="http://wwwibc.embl-heidelbergwustl.deedu/">EMBL-HeidelbergWashington U.</a> <br>
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<a href="http://mips11dot.mipsimgen.biochembcm.mpgtmc.deedu:9331/wwwgene-finder/programs/atlas_pergf.html"><strong>ATLASGene Finder</strong></a> - Search Predict Gene Structure, Internal Exons and Splicing Sites in DNA and Protein Sequence Databases Exon-Exon Junstion in cDNA at <a images="" alt="(W3)" href="http://speedywww.mipsbcm.biochemtmc.mpg.deedu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src=">MIPS</a>, Germany <br>
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<a href="http://cammsg3genome.caoseerie.kunfr/Genome-DBS.nlhtml"><strong>Genome Databases</strong></a> and <a href="http:8000/srs/srsc?-info+BERLINgenome.eerie.fr/Genome_Centre.html"><strong>BERLINGenome Centers</strong></a> - RNA Databank of 5S rRNA and 5S rRNA Gene Sequences World Wide Links at <a href="http://cammsg3.caosgenome.kuneerie.nl:8000fr/">CAOS/CAMMEERIE-Nimes</a>, The NetherlandsFrance <br>
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<a href="http://sgbcdwww.weizmannri.bbsrc.ac.iluk/Bicgenome_workstation/ExecApplworkstation.html"><strong>BIOACCELERATORGenome Workstation</strong></a> - Genome Related Links at <a href="http://bioinformaticswww.weizmannri.bbsrc.ac.il:70uk/">Weizmann Roslin Institute of Science</a>, IsraelUK <br>
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<a images="" alt="!New!" href="http://wwwbiotech.ocmschem.oxindiana.ac.ukedu/~birneyWebChris/cusi/biocusimaps.html%3E%3Cb%3EbioCUSI%3C"><strong>Genomic Maps</b%3E%3Cstrong></a%3E%3Cimg%20src=">- Multiple Access Links to Biological Servers Genome Specific Resources at </a><a href="http://www.ocmsbiotech.oxchem.acindiana.ukedu/">OCMSBiotech-OxfordIndiana</a> <br>
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<a href="ftphttp://pdbwww.pdbgdb.bnl.govorg/Dan/user_groupgq/biological_unitsgq.form.html"><strong>Biological UnitsGenQuest</strong></a> - Expanded PDB Entries Search Against Protein Databases with Full Biological Units the Q server at <a href="http://suntidwww.bnlgdb.gov:8080org/bnlhopkins.html">Brookhaven National LaboratoryJohns Hopkins</a> <br>
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<a href="http://wwwavalon.ocmsepm.oxornl.acgov/Grail-bin/EmptyGrailForm"><strong>Grail</strong></a> - Analysis of the Protein Coding Potential of a DNA Sequence (see <a href="ftp://arthur.epm.ukornl.gov/~birneypub/palettexgrail/Manual.htmlgrail-genquest.July94"><strong>Biologist's Search PaletteDocumentation</strong></a> - Collection of Search Engines for Biological Databases ) at <a href="http://www.ocmsavalon.oxepm.acornl.ukgov/">Oxford U.ORNL</a>, UK <br>
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<a href="http://www.ncbincgr.nlm.nih.gov/Recipon/bs_seq.html"><strong>BLAST</strong></a> - Basic Local Alignment Research Tool at <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a>, <a href="http://swarmer.stanford.edu/cgi-bin/blastq-form?options=simple"><strong>BLAST</strong></a> (hiv, vector, etc) at <a href="http://motif.stanford.edu/">Stanford U.</a>, <a href="http://www.genome.ad.jp/SIT/BLAST.html"><strong>BLAST</strong></a> at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan, <a href="http://genome.eerie.frorg/blastgsdb/blast-query.html"><strong>BLASTGSDB</strong></a> at <a href="http://genome.eerie.fr/home.html">EERIE-Nimes</a>, France, <a href="http://www.crihan.fr/www/blast.html"><strong>BLAST</strong></a> Genome Sequence Database at <a href="http://www.crihanncgr.fr/">CRIHAN</a>, France <a href="http:org/ncgr/dot.imgen.bcm.tmc.edu:9331/cgi-bin/seq-search/blast_form_local.pl"><strong>BLAST</strong></a> (with Entrez and SRS Links) at <a href="http://gc.bcm.tmc.edu:8088/">Baylor College of Medicine</a> and <a href="http://ulrec3.unil.ch/software/EPFLBLAST_formncgr.html"><strong>BLAST</strong></a> at <a href="http://www.epfl.ch/">EPFLNCGR</a>, Switzerland <br>
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<a href="http://dotexpasy.imgenhcuge.bcm.tmc.edu:9331ch/www/seqguess-search/Option/blastpatprot.html"><strong>BLASTPATGuessProt</strong></a> - BLAST-based Pattern Database Search (see <a href="http://dot.imgen.bcm.tmc.edu:9331/seq-search/Help/blastpat.html"><strong>Documentation</strong></a>) Selects SwissProt proteins given pI and Mw at <a href="http://gcexpasy.bcmhcuge.tmc.edu:8088ch/">Baylor College of MedicineExPASy</a>, Switzerland <br>
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<a href="http://wwwibc.embl-heidelberg.de/searches/blitz_input.html"><strong>BLITZ</strong></a> (see <a href="http://wwwwustl.ebi.ac.ukedu/searcheshhs/blitz_doc.html"><strong>DocumentationHHS</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> SwissProt and PDB Systematic Sequence Classification Database at <a href="http://wwwibc.ebiwustl.ac.ukedu/searches/blitz_input.html"><strong>BLITZ</strong></a> at <a href="http://www.ebiWashington U.ac.uk/">EBI</a>, UK <br>
<br>
<a href="http://wwwcammsg3.blockscaos.fhcrckun.org/"><strong>BLOCKS</strong></a> - Database of Highly Conserved Regions in Proteins and <a href="gopher://klaatu.fhcrc.org/77/.indexes/.blocksindex/blocksindex"><strong>BLOCKS-WAIS</strong></a> at <a href="gopher://klaatu.fhcrc.org/">Fred Hutchinson Cancer Research Center</a>, <a href="httpnl://www.embl-heidelberg.de8000/srs/srsc?-info||BLOCKS+HOVERGEN"><strong>BLOCKSHOVERGEN</strong></a> - Database of Homologous Vertebrate Genes at <a href="http://wwwcammsg3.caos.embl-heidelbergkun.de/">EMBL-Heidelberg</a> and <a href="httpnl:8000//www.public.iastate.edu/~pedro/blocks_query.html"><strong>BLOCKS-Search<CAOS/strong></a> w/ search from <a href="http://www.cc.iastate.edu/welcome.html">Iowa StateCAMM</a>, The Netherlands <br>
<br>
<a href="http://bimasspeedy.dcrtmips.nihbiochem.govmpg.de/sqlwww/BMRBgateprograms/hpt_persistent.html"><strong>BioMagResBankHPT</strong></a> - A Protein Sequence Pattern Recognition in the PIR Database of NMRand <a href="http://speedy.mips.biochem.mpg.de/www/programs/hpt_homol.html"><strong>HPT-Derived Protein Structures Homology</strong></a> at <a href="http://bimasspeedy.mips.dcrtbiochem.nihmpg.govde/">BIMAS-NIHMIPS</a>, Germany <br>
<br>
<a href="http://genomewww.csembl-heidelberg.unc.edude/srs/online.htmlsrsc?-info||HSSP"><strong>BioSCANHSSP</strong></a> - Biological Sequence Comparative Analysis Database of Homology-Derived Structures of Proteins based on PDB and SwissProt at <a href="http://genomewww.csembl-heidelberg.unc.edude/">U. North CarolineEMBL-Heidelberg</a> <br>
<br>
<a href="httpgopher://ibm4.carbgopher.nistgdb.gov:4400org/bmcd77/bmcd.htmlINDEX/kabat"><strong>BMCDKabat </strong></a> - Biological Macromolecule Crystallization Database of Proteins of Immunological Interest at <a href="http://ibm4www.carbgdb.nist.gov:4400org/carbhopkins.html">CARBJohns Hopkins</a> <br>
<br>
<a href="http://ulrec3www.unilprosci.chuci.edu/softwarekinemages/BOX_formKinemageIndex.html"><strong>BOXSHADEKinemage-Index</strong></a> - Pretty Printing and Shading of Multiple-Sequence Alignments "Kinetical Images" by Protein Type at <a href="http://ulrec3www.prosci.uniluci.chedu/">ISRECProtein Science</a>, Switzerland <br>
<br>
<a href="http://wwwibc.biochemwustl.ucl.ac.uk/bsmedu/cathklotho/CATHintro.html"><strong>CATHKlotho</strong></a> - Protein Structure Classification Biochemical Compounds Declarative Database at <a href="http://www.biochem.uclibc.acwustl.ukedu/">UCL-LondonWashington U.</a>, UK <br>
<br>
<a href="http://ibcgenome.wustleerie.edufr/msafasta/clustallalign-query.cgihtml"><strong>CLUSTALWLALIGN</strong></a> - Multiply Sequence Calculates the N-Best Local Alignments Between Two Sequences at <a href="http://ibcgenome.wustleerie.edufr/home.html">IBCEERIE-Washington U.Nimes</a>, France <br>
<br>
<a href="http://alcesgenome.medeerie.umn.edufr/fasta/cuselfasta-query.html"><strong>Codon UsageLFASTA</strong></a> - Analysis of Different ORFs in a Gene Sequence Local Similarity Searches Between Two Sequences Showing Local Alignments at <a href="http://wwwgenome.umneerie.edufr/home.html">U. MinnesotaEERIE-Nimes</a>, France <br>
<br>
<a href="http://ulrec3www.unilgenome.chad.jp/softwarehtbin/COILS_form.htmlbfind_ligand"><strong>CoilsLIGAND</strong></a> - Prediction of Coiled Coil Regions in Protein Sequences Ligand Chemical Database for Enzyme Reactions at <a href="http://ulrec3www.genome.unilad.chjp/">ISRECGenomeNet</a>, SwitzerlandJapan <br>
<br>
<a href="gopher://gopher.nih.gov/77/gopherlib/indices/limb/index"><strong>LiMB</strong></a> - Listing of Molecular Biology Databases at <a href="http://benwww.nih.vubgov/">NIH</a> and <a href="http://www.acembl-heidelberg.bede/srs/srsc?-id||777855676_129.186.4.14||-info+CPGISLE||LIMB"><strong>CpGIsleLiMB</strong></a> - CpG Islands Database at <a href="http://benwww.vubembl-heidelberg.ac.bede/">BENEMBL-Heidelberg</a>, Belgium <br>
<br>
<a href="http://cbrg.inf.ethz.ch/subsection3_1_7subsection3_1_3.html"><strong>DarwinMassSearch</strong></a> - Data Analysis and Retrieval With Indexed Nucleotide/Peptide Sequences Search SwissProt or EMBL Databases by Protein Mass After Digestion at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br>
<br>
<a href="http://wwwcgsc.ncbibiology.nlmyale.nih.gov/dbESTedu/indexmetab.html"><strong>dbESTMetabolic Database</strong></a> - Database of Expressed Sequence Tags Metabolic Reactions and Pathways at <a href="http://wwwcgsc.ncbibiology.nlmyale.nihedu/">CGSC-Yale U.gov</a> and <a href="http://moulon.inra.fr/cgi-bin/nph-acedb3.1/acedb/metabolisme?find+Reaction_or_pathway%3By+14+69">NCBI<strong>Metabolic Database</strong></a> at <a href="http://moulon.inra.fr/">INRA-Moulon</a>, France <br>
<br>
<a href="http://www.genomeinformatics.adjax.jporg/dbget/dbgetmgd.html"><strong>DBGETMGD</strong></a> - Integrated Mouse Genome Database Retrieval System (w/ <a href="http://www.genome.ad.jp/dbget/dbget.links.html"><strong>diagram links</strong></a>) at <a href="http://www.genomeinformatics.adjax.jporg/">GenomeNetJackson Laboratory</a>, Japan <br>
<br>
<a href="gopher://gopherwehil.nigwehi.acedu.jpau/7waissrc%3a11/DDBJ_Gopher_WAIS/DNA_seq_index_searchMHCPEP.srcDB"><strong>DDBJMHCPEP</strong></a> - DNA Database of Japan Major Histocompatibility Complex (MHC) Binding Peptides at <a href="http://www.nigwehi.acedu.jpau/">National Institute of GeneticsWEHI-Melbourne</a>, JapanAustralia <br>
<br>
<a href="http://alcesspeedy.medmips.umnbiochem.edumpg.de/rawdotwww/programs/hpt_persistent.html"><strong>Dot PlotMIPS-Alert</strong></a> - Compare a DNA Automated Sequence with Itself Information Queries at <a href="http://wwwspeedy.mips.biochem.umnmpg.edude/">U. MinnesotaMIPS</a>, Germany <br>
<br>
<a href="http://www.nih.gov/molecular_modelinghtbin/drugbank.htmlpdb"><strong>DrugBankMolecules R US</strong></a> - Three-dimensional Drug Structure Databank Interactive Text and Images of PDB Files at <a href="http://www.nih.gov/">NIH</a> <br>
<br>
<a href="http://www.embl-heidelberg.de/srs/srsc?-id||777855676_129.186.4.14||-info+DSSP||MOLPROBE"><strong>DSSPMPBD</strong></a> - Database of Secondary Structure of Proteins from PDB (see Molecular Probe Data Base at <a href="http://www.sander.embl-heidelberg.de/dssp">EMBL-Heidelberg</a> and <a href="gopher://descripgopher.htmlslu.se/7waissrc%3a/wais-dbs/Biology/Oligos"><strong>DocumentationMPDB</strong></a>) at <a href="httpgopher://wwwgopher.embl-heidelbergslu.dese/">EMBL-HeidelbergU. Agricultural Sciences</a>, Sweden <br>
<br>
<a href="http://wwwcuhhca.gdbhhmi.org/Dan/proteins/ec-enzymecolumbia.html"><strong>EC Enzyme<edu/strong><moose/a> at <a href="http://www.gdb.org/hopkins.html">Johns Hopkins</a> and <a href="http://www.genome.ad.jp/htbin/show_ECtable"><strong>EC Number TableMOOSE</strong></a> - Macromolecular Object Oriented Search Engine to Extract PDB Contained Information at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan and <a href="http://spectercuhhca.dcrthhmi.nihcolumbia.gov:8004/Enzymesedu/enzymes.html"><strong>GenoBase Enzyme Index</strong></a> at <a href="http://www.nihColumbia U.gov/">NIH</a> <br>
<br>
<a href="http://susiibc.biowustl.uni-giessen.de/usr/local/www/htmledu/ecdcmsa.html"><strong>ECDCMSA</strong></a> - <em>E. coli</em> Database Collection Multiple Sequence Alignment at <a href="http://wwwibc.uni-giessenwustl.deedu/">Uni-GießenWashington U.</a>, Germany <br>
<br>
<a href="gopherhttp://bioxwww.embnetgenome.unibasad.ch:13021jp/77SIT/MOTIF.index/embl/indexhtml"><strong>EMBLMOTIF</strong></a> - Nucleotide Sequence Database and Search Patterns in Protein Sequences at <a href="gopherhttp://bioxwww.embnetgenome.unibasad.chjp/">GenomeNet</a>, Japan <a href="http:13021/77/www.public.indexiastate.edu/xembl~pedro/indexmotif_query.html"><strong>EMBL-New EntriesMotif</strong></a> at <a href="http://www.chgenome.ad.jp/">GenomeNet</a>, Japan w/ search from <a href="http://www.cc.embnetiastate.orgedu/welcome.html">EMBnet-BaselIowa State</a> <br>
<br>
<a href="http://wwwdot.imgen.ebibcm.actmc.ukedu:9331/srsmulti-align/srsc?multi-info||EMNEWalign.html"><strong>EMNEWMultiple Sequence Alignments</strong></a> - Index of New EMBL Sequences CLUSTAL-W, MAP, and PIMA alignments at <a href="http://www.ebibcm.actmc.ukedu/">EBIBaylor College of Medicine</a>, UK <br>
<br>
<a href="http://specterndbserver.dcrtrutgers.nih.gov:8004/Compound/compound_toc_by_name.html"><strong>EMP Compound</strong></a> and <a href="http:/edu/specter.dcrt.nih.gov:8004/Pathway/pathway_toc_by_name.html"><strong>EMP PathwaysNDB</strong></a> - Selkov Enzyme and Metabolic Pathway (EMP) Nucleic Acid Database at <a href="http://wwwRutgers U.nih.gov/">NIH</a> <br>
<br>
<a href="http://www.mcscmpharm.anlucsf.govedu/home~nomi/towell/metabhomennpredict.html"><strong>EMP Metabolic PathwaysnnPredict</strong></a> - Navigation in Metabolic Pathways from Predict Protein Secondary Structure at <a href="http://wormworld.ucsf.edu/">UCSF</a> and <a href="http://www.mcspublic.anliastate.govedu/home~pedro/compbio/defaultnnpredict_query.html">MCS-Computational Biology<strong>nnPredict</strong></a> at w/ search from <a href="http://www.anlcc.iastate.govedu/welcome.html">Argonne National LaboratoryIowa State</a> <br>
<br>
<a href="http://www.ncbigdb.nlm.nih.govorg/SearchDan/Entrezproteins/indexnrl3d.html"><strong>ENTREZNRL_3D</strong></a> - Protein and Nucleotide Sequence/Structure Database (see derived from PDB at <a href="http://atlaswww.nlmgdb.nihorg/hopkins.govhtml">Johns Hopkins</a> and <a href="http:5700/WWW2/WWW2_paper2www.embl-heidelberg.htmlde/srs/srsc?-info||NRL3D"><strong>DocumentationNRL_3D</strong></a>) at <a href="http://www.ncbi.nlm.nihembl-heidelberg.govde/">NCBIEMBL-Heidelberg</a> <br>
<br>
<a href="http://expasyddbjs4h.hcugegenes.ch/sprotnig.ac.jp/enzyme.html"><strong>ENZYMENRSub</strong></a> - The Enzyme Data Bank A Non-Redundant DNA Sequence Database for <em>Bacillus subtilis</em> at <a href="http://expasywww.nig.hcugeac.chjp/">ExPASyNational Institute of Genetics</a>, SwitzerlandJapan <br>
<br>
<a href="http://cbrg.inf.ethz.ch/subsection3_1_4.html"><strong>NuclPepSearch</strong></a> - Search SwissProt for a Nucletide Sequence at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br>
<br>
<a href="http://chait-sgi.rockefeller.edu/"><strong>NYC-MASS</strong></a> - Protein Mass Spectrometry Database at <a href="http://www.rockefeller.edu/ru.home.html">Rockefeller U.</a> <br>
<br>
<a href="http://www.embl-heidelberg.de/obstruct/obs_form.html"><strong>OBSTRUCT</strong></a> - Correlate Sequence Subsets of PDB Protein Structures at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://gdbwww.gdb.org/omimdoc/omimtop.html"><strong>OMIM</strong></a> - Online Mendelian Inheritance in Man at <a href="http://www.gdb.org/hopkins.html">Johns Hopkins</a> <br>
<br>
<a href="gopher://megasun.bch.umontreal.ca/11/Organelles/Genomes"><strong>Organelle Genome</strong></a> - A Sequence Database at <a href="gopher://megasun.bch.umontreal.ca/">U. Montreal</a> <br>
<br>
<a href="http://biotech.chem.indiana.edu/lib/orgstrain.html"><strong>Organisms and Strains</strong></a> - Links to Databases Specific to Organism and Cell Collections at <a href="http://biotech.chem.indiana.edu/">Biotech-Indiana</a> <br>
<br>
<a href="http://www.gdb.org/Dan/proteins/owl.html"><strong>OWL</strong></a> - Non-Redundant Protein Sequence Database (Updated Daily) at <a href="http://www.gdb.org/hopkins.html">Johns Hopkins</a> and <a href="http://www.biochem.ucl.ac.uk/~attwood/OWL/OWL.html"><strong>OWL</strong></a> at <a href="http://www.biochem.ucl.ac.uk/">UCL-London</a>, UK <br>
<br>
<a href="http://www.mcs.anl.gov/home/papka/ROSS/patscan.html"><strong>PatScan</strong></a> - Look for Pattern Matches in DNA or Protein Sequences at <a href="http://www.mcs.anl.gov/">Argonne National Laboratory</a> <br>
<br>
<a href="http://ulrec3.unil.ch/software/PATFND_form.html"><strong>PatternFind</strong></a> - Search the SwissProt and Genpept Protein Sequence Databases with a <a href="http://expasy.hcuge.ch/txt/profile.txt">PROSITE-formatted</a> Pattern at <a href="http://ulrec3.unil.ch/">ISREC</a>, Switzerland <br>
<br>
<a href="http://www-pdd.ncifcrf.gov/PDD/GEN-docs/indexGEN.html"><strong>PDD</strong></a> - Protein Disease Database at <a href="http://www-pdd.ncifcrf.gov/">NIMH-NCI</a> <br>
<br>
<a href="http://www.pdb.bnl.gov:4148/cgi-bin/browse"><strong>PDB-Browser</strong></a>, <a href="gopher://pdb.pdb.bnl.gov/77/xfullindex/full"><strong>PDB-Index</strong></a> and <a href="gopher://pdb.pdb.bnl.gov/77/xstatusindex/status"><strong>PDB-Pending</strong></a> - <a href="http://www.pdb.bnl.gov/">Protein Data Bank</a> Structures at <a href="http://suntid.bnl.gov:8080/bnl.html">Brookhaven National Laboratory</a>, <a href="http://www.genome.ad.jp/htbin/bfind_pdb"><strong>PDB</strong></a> at <a href="http://www.genome.ad.jp/">GenomeNet</a> Japan, <a href="http://www.ibf.unige.it/7/sci/.PDB/pdbsearch"><strong>PDB</strong></a> at <a href="http://www.ibf.unige.it/">U. Genova</a>, Italy, <a href="http://www.ucmb.ulb.ac.be/pdb_seq_rel_jan94"><strong>PDB-List</strong></a> and <a href="http://www.ucmb.ulb.ac.be/pdb_annot_jan94"><strong>PDB-Annotated</strong></a> at <a href="http://www.ucmb.ulb.ac.be/index.html">Brussels Free U.</a>, Belgium and <a href="http://www.sander.embl-heidelberg.de/pdbsel/explanation.html"><strong>PDB-Select</strong></a> at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://www.nih.gov/molecular_modeling/pdb_at_a_glance.html"><strong>PDB At A Glance</strong></a> - Hierarchic Access to PDB Files at <a href="http://www.nih.gov/">NIH</a> <br>
<br>
<a href="http://www.embl-heidelberg.de/srs/srsc?-id||781260221_129.186.4.14||-info||PDBFINDER"><strong>PDBFINDER</strong></a> - A Database Containing PDB, DSSP and HSSP Information (see <a href="http://www.sander.embl-heidelberg.de/pdbfinder/overview.html"><strong>Documentation</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://www.genome.ad.jp/htbin/bfind_pdbstr"><strong>PDBSTR</strong></a> - Re-organized Protein Data Bank at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan <br>
<br>
<a href="http://cbrg.inf.ethz.ch/subsection3_1_5.html"><strong>PepPepSearch</strong></a> - Search SwissProt for a Peptide Sequence at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br>
<br>
<a href="http://lenti.med.umn.edu/~shoop/sample.html"><strong>Plant EST Analysis</strong></a> - Similarity Analysis of Different Plant cDNA/EST Sequences at <a href="http://lenti.med.umn.edu/">U. Minnesota</a> <br>
<br>
<a href="http://www.public.iastate.edu/~pedro/pprotein_query.html"><strong>PHD</strong></a> - Predict Protein Secondary Structure at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> w/ search from <a href="http://www.cc.iastate.edu/welcome.html">Iowa State</a> <br>
<br>
<a href="http://www.pasteur.fr/sas/phy/boot-sub.html"><strong>PHILIP-Bootstrapping Analysis</strong></a> - Divergence Between Protein or Nucleotide Sequences at <a href="http://www.pasteur.fr/">Institut Pasteur</a>, France <br>
<br>
<a href="http://genome.eerie.fr/gcg/phospepsort-query.html"><strong>Phospepsort</strong></a> - Digest Phosphorylated Peptide Sequences at <a href="http://genome.eerie.fr/home.html">EERIE-Nimes</a>, France <br>
<br>
<a href="http://expasy.hcuge.ch/ch2d/pi_tool.html"><strong>pI/Mw</strong></a> - Compute the Theoretical pI and Molecular Weight of a Protein Sequence at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br>
<br>
<a href="http://www.gdb.org/Dan/proteins/pir.html"><strong>PIR</strong></a> - Protein Identification Resource Database at <a href="http://www.gdb.org/hopkins.html">Johns Hopkins</a> <br>
<br>
<a href="http://www.embl-heidelberg.de/srs/srsc?-info||PIRALN"><strong>PIRALN</strong></a> - Database of Sequence Alignments based on PIR at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://www.genome.ad.jp/htbin/bfind_pmd"><strong>PMD</strong></a> - Protein Mutant Database at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan and <a href="http://www.embl-heidelberg.de/srs/srsc?-info||PMD"><strong>PMD</strong></a> at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://alces.med.umn.edu/pmotif.html"><strong>PMOTIF</strong></a> - Search Protein Motifs in Gene Sequence at <a href="http://www.umn.edu/">U. Minnesota</a> <br>
<br>
<a href="http://www.biophys.uni-duesseldorf.de/service/polandform.html"><strong>Poland</strong></a> - Calculate the Thermal Denaturation Profile of Double Stranded RNA or DNA at <a href="http://www.biophys.uni-duesseldorf.de/">Uni-Düsseldorf</a>, Germany <br>
<br>
<a href="http://www.embl-heidelberg.de/predictprotein/predictprotein.html"><strong>PredictProtein</strong></a> - Predict Protein Secondary Structure at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://www.genome.ad.jp/htbin/bfind_prf"><strong>PRF</strong></a> - Protein Research Foundation Sequence Database at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan <br>
<br>
<a href="http://www-genome.wi.mit.edu/cgi-bin/primer2.2/primer_front"><strong>Primer</strong></a> - Select PCR Primers in a Gene Sequence at <a href="http://www-genome.wi.mit.edu/">WICGR-MIT</a> and <a href="http://alces.med.umn.edu/rawprimer.html"><strong>Primer</strong></a> at <a href="http://www.umn.edu/">U. Minnesota</a> <br>
<br>
<a href="http://www.biochem.ucl.ac.uk/~attwood/PRINTS/PRINTS.html"><strong>PRINTS</strong></a> - Protein Motif Fingerprints Database (see <a href="file://gopher.embl-heidelberg.de/pub/databases/prints/prints.doc"><strong>Documentation</strong></a>) and <a href="http://www.biochem.ucl.ac.uk/~attwood/ALIGN/ALIGN.html"><strong>PRINTS-ALIGN</strong></a> at <a href="http://www.biochem.ucl.ac.uk/">UCL-London</a>, UK and <a href="http://www.ch.embnet.org/srs/srsc?-info+PRINTS"><strong>PRINTS</strong></a> at <a href="http://www.ch.embnet.org/">EMBnet-Basel</a>, Switzerland <br>
<br>
<a href="http://protein.toulouse.inra.fr/prodom.html"><strong>ProDom</strong></a> - A Protein Domain Database and <a href="http://protein.toulouse.inra.fr/prodom/blast_form.html"><strong>ProDom-Search</strong></a> at <a href="http://www.jouy.inra.fr/infoservices-INRA/infoservices_donnees.html">INRA-Toulouse</a>, France, <a href="http://www.sanger.ac.uk/~esr/prodom.html"><strong>ProDom</strong></a> and <a href="http://www.sanger.ac.uk/~esr/prodom-blast.html"><strong>ProDom-Search</strong></a> at <a href="http://www.sanger.ac.uk/">Sanger Centre</a>, UK and <a href="http://www.embl-heidelberg.de/srs/srsc?-id||777855676_129.186.4.14||-info||PRODOM"><strong>ProDom</strong></a> at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://ulrec3.unil.ch/software/PRFSCAN_form.html"><strong>ProfileScan </strong></a> - Search a Sequence Against a Library of Profiles at <a href="http://ulrec3.unil.ch/">ISREC</a>, Switzerland <br>
<br>
<a href="gopher://bmerc-gopher.bu.edu/11/Databases/prolink"><strong>ProLink</strong></a> - Integrated Database of Protein Structure, Sequence Homology, and Functional Pattern Information at <a href="http://bmerc-www.bu.edu/">BMERC</a> <br>
<br>
<a href="http://www.embl-heidelberg.de/prs.page"><strong>PROPSEARCH</strong></a> - Protein Sequence Search for Structural Homology Based on Aminoacid Properties at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://expasy.hcuge.ch/sprot/prosite.html"><strong>PROSITE</strong></a> - Protein Sites and Patterns Database at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland, <a href="http://ulrec3.unil.ch/software/PSTSCAN_form.html"><strong>PrositeScan</strong></a> at <a href="http://ulrec3.unil.ch/">ISREC</a>, Switzerland and <a href="http://www.ebi.ac.uk/searches/prosite_input.html"><strong>PROSITE-Search</strong></a> at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="file://ftp.embl-heidelberg.de/pub/databases/protein_extras"><strong>Protein-Extras</strong></a> at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
<br>
<a href="http://www.public.iastate.edu/~pedro/p_families.html"><strong>Protein Families</strong></a> - Links to Information on Different Protein Families at <a href="http://www.cc.iastate.edu/">Iowa State</a> <br>
<br>
<a href="http://chait-sgi.rockefeller.edu/cgi-bin/prot-id/1/1"><strong>Prot-ID</strong></a> - Identify a Protein from Masses of Enzymatic Digestion Peptide Fragments at <a href="http://chait-sgi.rockefeller.edu/">Rockefeller U.</a> <br>
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<a href="file://cb-iris.stanford.edu/pub/ProteinMovements/ProtMotDB.main.html"><strong>Protein Motions</strong></a> - DataBase of Protein Movements at <a href="http://hyper.stanford.edu/">Stanford U.</a> <br>
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<a href="http://bmerc-www.bu.edu/psa/"><strong>PSA</strong></a> - Protein Sequence Analysis for Sequences of Unknown Structure at <a href="http://bmerc-www.bu.edu/welcome.html">BMERC/MBCRR</a> <br>
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<a href="http://psort.nibb.ac.jp/"><strong>PSORT</strong></a> - Predict Protein Sorting Signals Coded in Amino Acid Sequences at <a href="http://www.genome.ad.jp/">GenomeNet</a>, Japan <br>
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<a href="http://dot.imgen.bcm.tmc.edu:9331/pssprediction/pssp.html"><strong>PSSP</strong></a> - Protein Secondary Structure Prediction at <a images="" alt="(W3)" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="></a><br>
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<a images="" alt="(W3)" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="> </a><a href="http://www.mcs.anl.gov/home/compbio/PUMA/Production/puma.html"><strong>PUMA</strong></a> - Phylogeny of Unicellular Organims with Metabolism and Alignments from <a href="http://www.mcs.anl.gov/home/compbio/default.html">MCS-Computational Biology</a> at <a href="http://www.anl.gov/">Argonne National Laboratory</a> <br>
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<a href="file://ftp.embl-heidelberg.de/pub/databases/protein_extras/puu/domains.puu"><strong>PUU</strong></a> - Protein Domains Database Based on PDB-Select at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
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<a href="http://geta.life.uiuc.edu/index.html"><strong>RDP</strong></a> - Ribosomal Database Project at U. Illinois <br>
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<a href="http://vent.neb.com/rebase/rebase.html"><strong>ReBase</strong></a> - Restriction Enzyme Database and <a href="http://www.neb.com/cgi-bin/wais_ref.pl"><strong>ReBase-Search</strong></a> at <a href="http://vent.neb.com/">New England Biolabs</a>, <a href="http://www.embl-heidelberg.de/srs/srsc?-id||777855676_129.186.4.14||-info||REBASE"><strong>ReBase</strong></a> at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> and <a href="http://www.gdb.org/Dan/rebase/rebase.html"><strong>ReBase</strong></a> at <a href="http://www.gdb.org/hopkins.html">Johns Hopkins</a> <br>
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<a href="http://www.embl-heidelberg.de/repro/rep_tot.html"><strong>REPRO</strong></a> - Recognition of Protein Sequence Repeats at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
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<a href="http://pundit.colorado.edu:8080/"><strong>RNA Secondary Structures</strong></a> - Information on Group I Introns and rRNA at <a href="http://www.colorado.edu/">U. Colorado-Boulder</a> <br>
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<a href="http://www-rrna.uia.ac.be/rrna/index.html"><strong>rRNA</strong></a> - Databases of Ribosomal Subunit RNA Sequences at <a href="http://www.uia.ac.be/">U. Antwerp</a>, Belgium <br>
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<strong>RSVP</strong> - Rapid Sequence Visualization in Postscript for Analysis of DNA Sequences at <a href="http://cbil.humgen.upenn.edu/">CBIL-U. Pennsylvania</a> <br>
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<a href="http://ulrec3.unil.ch/software/SAPS_form.html"><strong>SAPS</strong></a> - Statistical Analysis of Protein Sequences at <a href="http://ulrec3.unil.ch/">ISREC</a>, Switzerland <br>
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<a href="http://base.icgeb.trieste.it/sbase/"><strong>SBASE</strong></a> - Library of Protein Domains and <a href="http://base.icgeb.trieste.it/sbase/blast.html"><strong>SBASE-Search</strong></a> at <a href="http://base.icgeb.trieste.it/">ICGEB-Trieste</a>, Italy <br>
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<a href="http://geoff.biop.ox.ac.uk/servers/scanps_server.html"><strong>SCANPS</strong></a> - Scan Protein Sequences at <a href="http://geoff.biop.ox.ac.uk/">U. Oxford</a>, UK <br>
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<a href="http://www.bio.cam.ac.uk/scop/"><strong>SCOP</strong></a> - Structural Classification of Proteins at <a href="http://www.bio.cam.ac.uk/">Cambridge</a>, UK and <a href="http://www.nick.med.usf.edu/scop/index.html"><strong>SCOP</strong></a> at <a href="http://www.nick.med.usf.edu/">U. South Florida</a> <br>
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<a href="http://dot.imgen.bcm.tmc.edu:9331/seq-annot/home.html"><strong>Sequence Annotation</strong></a> - Annotations on NCBI Sequences at <a images="" alt="(W3)" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="></a><br>
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<a images="" alt="(W3)" href="http://www.bcm.tmc.edu/%3EBaylor%20College%20of%20Medicine%3C/a%3E%20%3Cimg%20src="> </a><a href="http://alces.med.umn.edu/rawtrans.html"><strong>Sequence Translation</strong></a> - Translate Gene Sequences at <a href="http://www.umn.edu/">U. Minnesota</a> <br>
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<a href="ftp://dasher.wustl.edu/pub/sleuth/data"><strong>Sleuth</strong></a> - Amino Acid Conformation and Solvent Accessibility of PDB Files at <a href="http://ibc.wustl.edu/">Washington U.</a> <br>
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<a href="http://www.ibcp.fr/predict.html"><strong>SOPM</strong></a> - Self Optimized Prediction Method for Prediction of Protein Secondary Structure at <a href="http://www.ibcp.fr/">IBCP-CNRS</a>, France <br>
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<a href="http://www.embl-heidelberg.de/srs/srsc"><strong>SRSWWW</strong></a> - Network Browser for Databanks in Molecular Biology (w/ <a href="http://www.embl-heidelberg.de/srs/net.html"><strong>diagram links</strong></a>) at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
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<a href="http://www.ch.embnet.org/srs/index.html"><strong>SRSWWW-Directory</strong></a> - Directory of SRSWWW Network Browsers for Biological Databanks and <a href="http://www.ch.embnet.org/srs/status.html"><strong>SRSWWW-Global Status</strong></a> at <a href="http://www.ch.embnet.org/">EMBnet-Basel</a> <br>
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<a href="http://genome.eerie.fr/fasta/ssearch-query.html"><strong>SSEARCH</strong></a> - Universal Sequence Comparison Using the Smith-Waterman Algorithm at <a href="http://genome.eerie.fr/home.html">EERIE-Nimes</a>, France <br>
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<a href="http://www.embl-heidelberg.de/sspred/sspred_info.html"><strong>SSPRED</strong></a> - Predict the Secondary Structure of Proteins at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a>, Germany <br>
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<a href="http://www.embl-heidelberg.de/stride/stride.html"><strong>STRIDE</strong></a> - Find Secondary Structural Elements in PDB Proteins Structures at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
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<a href="http://www-genome.wi.mit.edu/cgi-bin/www-STS_Pipeline/pipeline_front"><strong>STS Pipeline</strong></a> - Analysis and STS Primer Picking of Short DNA Sequences with Duplicate Checking, Sequence Repeat Finding, Restriction Analysis, Vector Identification and BLAST Searching at <a href="http://www-genome.wi.mit.edu/">MIT</a> <br>
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<a href="http://www.ucmb.ulb.ac.be/~joan/survol/form.html"><strong>SURVOL</strong></a> - Analysis of Protein Atomic Volumes at <a href="http://www.ucmb.ulb.ac.be/">UCMB</a>, Belgium <br>
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<a href="http://expasy.hcuge.ch/ch2d/ch2d-top.html"><strong>Swiss-2DPage</strong></a> - Two-dimensional Polyacrylamide Gel Electrophoresis Database at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br>
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<a href="http://www.ebi.ac.uk/srs/srsc?-info+SWISSDOM"><strong>SWISSDOM</strong></a> - SwissProt Entries in a ProDom Map at <a href="http://www.ebi.ac.uk/">EBI</a>, UK <br>
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<a href="http://expasy.hcuge.ch/swissmod/SWISS-MODEL.html"><strong>Swiss-Model</strong></a> - Automated Protein Modelling at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br>
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<a href="http://www.ebi.ac.uk/srs/srsc?-info||SWISSNEW"><strong>SWISSNEW</strong></a> - New SwissProt Sequences at <a href="http://www.ebi.ac.uk/">EBI</a>, UK <br>
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<a href="http://expasy.hcuge.ch/sprot/sprot-top.html"><strong>SwissProt</strong></a> - Protein Sequence Database (+ Weekly Updates) at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br>
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<a href="http://expasy.hcuge.ch/swisshop/SwissShopReq.html"><strong>Swiss-Shop</strong></a> - Automated SwissProt and Prosite Information Queries at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br>
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<a href="http://www.gdb.org/Dan/tbase/tbase.html"><strong>TBASE</strong></a> - Transgenic/Targeted Mutation Database at <a href="http://www.gdb.org/hopkins.html">Johns Hopkins</a> <br>
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<a href="http://genome.eerie.fr/fasta/tfasta-query.html"><strong>TFASTA</strong></a> - Match a Protein Sequence Against All Six Frames of GenBank Sequences at <a href="http://genome.eerie.fr/home.html">EERIE-Nimes</a>, France <br>
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<a href="gopher://gopher.nih.gov/77/gopherlib/indices/tfd/index"><strong>TFD</strong></a> - Transcription Factor Database at <a href="http://www.nih.gov/">NIH</a> <br>
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<a href="http://www.embl-heidelberg.de/srs/srsc?-info+TFFACTOR"><strong>TFFACTOR</strong></a> and <a href="http://www.embl-heidelberg.de/srs/srsc?-info+TFSITE"><strong>TFSITE</strong></a> - Transcription Factor Data at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
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<a href="http://alces.med.umn.edu/rawtm.html"><strong>Tm</strong></a> - Oligonucleotide Melting Point Determination at <a href="http://www.umn.edu/">U. Minnesota</a> <br>
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<a href="http://www.embl-heidelberg.de/tmap/tmap_sin.html"><strong>TMAP</strong></a> - Identification of Transmembrane Segments on a Protein Sequence at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
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<a href="ftp://ulrec3.unil.ch/pub/tmbase"><strong>TMBASE</strong></a> - Transmembrane Protein Database at <a href="http://www.unil.ch/">U. Lausanne</a>, Switzerland <br>
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<a href="http://ulrec3.unil.ch/software/TMPRED_form.html"><strong>TMpred</strong></a> - Prediction of Transmembrane Regions and Orientation in Protein Sequencs at <a href="http://ulrec3.unil.ch/">ISREC</a>, Switzerland <br>
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<a href="http://expasy.hcuge.ch/www/dna.html"><strong>Translate</strong></a> - Translate a Nucleotide Sequence to a Protein at <a href="http://expasy.hcuge.ch/">ExPASy</a>, Switzerland <br>
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<a href="http://cbrg.inf.ethz.ch/subsection3_1_6.html"><strong>TreeGen</strong></a> - Tree Generation from Distance Data at <a href="http://cbrg.inf.ethz.ch/">ETH-Zürich</a>, Switzerland <br>
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<a href="http://www.embl-heidelberg.de/srs/srsc?-id||781260221_129.186.4.14||-info||TREMBL"><strong>TREMBL</strong></a> - Database of Translated Peptide Sequences of All CDS Features from EMBL Sequences at <a href="http://www.embl-heidelberg.de/">EMBL-Heidelberg</a> <br>
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<a href="http://cammsg3.caos.kun.nl:8000/srs/srsc?-info+VECBASE"><strong>VecBase</strong></a> - Cloning Vector Sequence Database.at <a href="http://cammsg3.caos.kun.nl:8000/">CAOS/CAMM</a>, The Netherlands <br>
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<a href="http://biology.queensu.ca/~miseners/vector.html"><strong>Vector-DB</strong></a> - Cloning Vector Database at <a href="http://www.queensu.ca/">Queen's U.-Kensington</a>, Canada , <a href="http://ben.vub.ac.be/srs/srsc?-info+VECTOR"><strong>VECTOR</strong></a> at <a href="http://ben.vub.ac.be/">BEN</a>, Belgium , <a href="gopher://gopher.gdb.org/77/.INDEX/vector"><strong>Vector</strong></a> at <a href="http://www.gdb.org/hopkins.html">Johns Hopkins</a> and <a href="gopher://virus1.virus.kyoto-u.ac.jp/77/.index/vector.ig/index"><strong>Vector-ig</strong></a> at <a href="http://virus1.virus.kyoto-u.ac.jp/">IVR</a>, Kyoto-U., Japan <br>
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<a href="http://www.bio.cam.ac.uk/seqlogo/logo.cgi"><strong>WebLogo</strong></a> - Sequence Logo Generation at <a href="http://www.bio.cam.ac.uk/">Cambridge U.</a>, UK <br>
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<a href="http://kestrel.ludwig.ucl.ac.uk/zpred.html"><strong>ZPRED</strong></a> - MultPredict Secondary Structure of Multiply Aligned Protein Sequences at <a href="http://kestrel.ludwig.ucl.ac.uk/">Ludwig Institute for Cancer Research</a>, UK <br>
