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<p><strong><span style="font-size:18px">Donghyuk&nbsp;&nbsp;Kim</span></strong></p>

<p><strong>- Research Interests&nbsp;</strong></p>

<p>Systems Biology, Computational Biology, Bioconversion bacterial strains, Bacterial Pathogen</p>

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<p><strong>- Education</strong></p>

<p>University of California, San Diego, California, USA, 2014</p>

<p>&nbsp;&nbsp; Degree : Ph.D., Bioengineering</p>

<p>&nbsp;&nbsp; Thesis : Systems Assessment of Regulator Components in Bacterial Transcription Initiation</p>

<p>&nbsp;&nbsp; Adviser : Dr. Bernhard O. Palsson, Systems Biology Research Group</p>

<p>Seoul National University, Seoul, Korea, 2006</p>

<p>&nbsp;&nbsp; Degree : B.S., Computer Science and Engineering</p>

<p>&nbsp;&nbsp; Thesis : Pattern Classification and Completion by Probabilistic Library Model</p>

<p>&nbsp;&nbsp; Adviser : Dr. Byung-Tak Zhang, Biointelligence Lab</p>

<p>&nbsp;&nbsp; Degree : B.S., Biological Sciences</p>

<p>&nbsp;&nbsp; Thesis : Designing Efficient siRNAs for Gene Silencing</p>

<p>&nbsp;&nbsp; Adviser : Dr. V. Narry Kim, RNomics Lab</p>

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<p><strong>- Professional Activity</strong></p>

<p> Editor, Journal of Microbiology and Biotechnology, March 2017 ~ Present</p>

<p>&nbsp;&nbsp; Committee of Research Affairs, Korean Society of Bioinformatics and Systems Biology, March 2017&nbsp;~ Present</p>

<p>&nbsp; &nbsp;Member, The Korean Society for Microbiology and Biotechnology, Jan 2018 ~ Present</p>

<p>&nbsp;&nbsp; Member, The Korean Society for Biotechnology and Bioengineering, Sep 2017 ~ Present</p>

<p>&nbsp;&nbsp; Member, The Microbiological Society of Korea, Feb 2018 ~ Present</p>

<p>&nbsp;&nbsp; Member, The Korean Society of Industrial and Engineering Chemistry, Sep 2017 ~ Present</p>

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<p><strong>- Publications</strong></p>

<p>&nbsp;1. Deciphering bacterial xylose metabolism and metabolic engineering of industrial microorganisms for use as efficient microbial cell factories. Kim D, Woo HM. <u>Appl Microbiol </u>Biotechnol. In press.</p>

<p>&nbsp;2. Genomic characterization of the lytic bacteriophage phiEaP-8 effective against both Erwinia amylovora and Erwinia pyrifoliae causing severe diseases in apple and pear. Park J, Lee GM, Kim D, Park DH, Oh CS. <u>Plant Pathol </u>J, In Press.</p>

<p>&nbsp;3. Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655. Gao Y, Yurkovich JT, Seo SW, Kabimoldayev I, Drager A, Chen K, Sastry A, Mih N, Yang L, Eichner J, Cho BK, Kim D*, Palsson BO*. <u>Nucleic Acids </u>Res, 2018 Aug 23. doi.org/10.1093/nar/gky752.</p>

<p>&nbsp;4. Draft genome sequence of lytic bacteriophage KP1 infecting Klebsiella pneumoniae. Kim Y#, Bang I#, Yeon YE, Park JY, Han BK, Kim H, Ahn JK, Kim D. <u>Korean J </u>Microbiol, 2018 Jul 2. doi.org/10.7845/kjm.2018.54.2.152.</p>

<p>&nbsp;5. Draft genome sequence of lytic bcteriophage CP3 infecting anaerobic bacterial pathogen Clostridium perfrigens. Kim Y#, Ko S#, Yeon YE, Le HT, Han BK, Kim H, Oh CS, Kim D. <u>Korean J </u>Microbiol, 2018 Jul 2. doi:10.7845/kjm.2018.54.2.149.</p>

<p>&nbsp;6. Coordination-driven self-assembly and anticancer studies of thiophene-derived donor and arene ruthenium acceptors. Kim T#, Song HS#, Singh J, Kim D, Kim H, Kang SC*, Chi KW*. <u>Inorganica Chimica </u>Acta. 2018 May 28. doi:10.1016/j.ica.2018.05.035.</p>

<p>&nbsp;7. Systematic metabolic engineering of Methylomicrobium alcaliphilum 20Z for 2,3-butanediol production from methane. Nguyen AD, Hwang IY, Lee OK, Kim D, Kalyuzhnaya MG, Mariyana R, Hadiyati S, Kim MS*, Lee YE*. <u>Metab </u>Eng, 2018 Apr 16. doi: 10.1016/j.ymben.2018.04.010.</p>

<p>&nbsp;8. Draft Genome Sequence of Lytic Bacteriophage CF1 Infecting Citrobacter freundii Isolates. Kim YJ, Ko S, Yeon YE, Lim J, Han BK, Kim H, Ahn JK, Kim D. <u>Korean J </u>Microbiol, 2018 Apr 1. doi:10.7845/kjm.2018.7099.</p>

<p>&nbsp;9. Draft Genome Sequence of Lytic Bacteriophage SA7 Infecting Staphylococcus aureus Isolates. Kim YJ, Lee GM, Taizhanova A, Han BK, Kim H, Ahn JK, Kim D. <u>Korean J </u>Microbiol, 2018 Apr 1. doi:10.7845/kjm.2018.7098.</p>

<p>&nbsp;10. Draft genome sequence of a bacterial plant pathogen Erwinia pyrifoliae strain EpK1/15 isolated from an apple twig showing black shoot blight. Lee GM, Oh EJ, Park J, Ko S, Park DH, Kim D*, Oh CS*. <u>Korean J </u>Microbiol, 2018 Apr 1. doi:10.7845/kjm.2018.7087.</p>

<p>&nbsp;11. Isolation and identification of novel equol-producing bacterial strains. Kwon JE, Lim J, Kim I, Kim D*, Kang SC*. <u>PLoS </u>One, 2018 Feb 15;13(2):e0192490. doi:10.1371/journal.pone.0192490</p>

<p>&nbsp;12. Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP. Kim D#,*, Seo SW#, Gao Y#, Nam H, Guzman GI, Cho BK, Palsson B&Oslash; *. <u>Nucleic Acids </u>Res. 2018 Jan 31. doi:10.1093/nar/gky069.</p>

<p>&nbsp;13. Multiple plasmid-borne virulence genes of Clavibacter michiganensis subsp. capsici critical for disease development in pepper. Hwang IS, Oh EJ, Kim D, Oh CS. <u>New </u>Phytol. 2017 Nov 14. doi:10.1111/nph.14896.</p>

<p>&nbsp;14. Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities. Fang X#, Sastry A#, Mih N, Kim D, Yurkovich JT, Lloyd CJ, Tan J, Gao Y, Yang L*, Palsson BO*. <u>Proc Natl Acad Sci U S </u>A. 2017 Sep 19;114(38):10286-10291. doi:10.1073/pnas.1702581114. Epub 2017 Sep 5.</p>

<p>&nbsp;15. Coordination-Driven Self-Assembly Using Ditopic Pyridyl&ndash;Pyrazolyl Donor and p-Cymene Ru(II)&nbsp;Acceptors: [2]Catenane Synthesis and Anticancer Activities. Jo JH#, Singh N#, Kim D#, Cho SM, Mishra A, Kim H, Kang SC*, Chi KW*. <u>Inorg </u>Chem. 2017 June 30. doi: 10.10</p>

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