View source for Hak-Min Kim BOX

<p><span style="font-size:20px"><strong>Box jellyfish (Cubozoa) genome</strong></span></p>

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<p><span style="font-size:16px"><strong>1. Raw data and project folder information</strong></span></p>

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	<li><span style="font-size:16px">Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/</span></li>
	<li><span style="font-size:16px">Raw data information:</span>
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		<li><span style="font-size:16px">Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata</span></li>
		<li><span style="font-size:16px">Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206</span></li>
		<li><span style="font-size:16px">RNA 2 tissue:</span>
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			<li><span style="font-size:16px">Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601</span></li>
			<li><span style="font-size:16px">Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT</span></li>
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<p><span style="font-size:16px"><strong>2. Paper status</strong>: Not yet published (Analysis in progress)</span></p>

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<p><span style="font-size:16px"><strong>3. Analysis result</strong></span></p>

<ol style="list-style-type:upper-alpha">
	<li><span style="font-size:16px">Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat</span></li>
	<li><span style="font-size:16px">Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa</span><br />
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	<img alt="" src="/ckfinder/userfiles/images/6_assembly_stat.PNG" style="height:306px; width:1055px" /><br />
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	<span style="font-size:16px">Due to the low depth PacBio raw data, PromethION long read sequencing was added and is currently being assembled by Hui-su Kim.</span></li>
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