Difference between revisions of "Hak-Min Kim BOX"
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| − | <p><strong>Box jellyfish (Cubozoa) genome</strong></p> | + | <p> </p> |
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| + | <p> </p> | ||
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| + | <p><span style="font-size:20px"><strong>Box jellyfish (Cubozoa) genome</strong></span></p> | ||
<hr /> | <hr /> | ||
<p> </p> | <p> </p> | ||
| − | <p><strong>1. Raw data and project folder information</strong></p> | + | <p><span style="font-size:16px"><strong>1. Raw data and project folder information</strong></span></p> |
<ol style="list-style-type:upper-alpha"> | <ol style="list-style-type:upper-alpha"> | ||
| − | <li>Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/</li> | + | <li><span style="font-size:16px">Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/</span></li> |
| − | <li>Raw data information: | + | <li><span style="font-size:16px">Raw data information:</span> |
<ol style="list-style-type:lower-roman"> | <ol style="list-style-type:lower-roman"> | ||
| − | <li>Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata</li> | + | <li><span style="font-size:16px">Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata</span></li> |
| − | <li>Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206</li> | + | <li><span style="font-size:16px">Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206</span></li> |
| − | <li>RNA 2 tissue: | + | <li><span style="font-size:16px">RNA 2 tissue:</span> |
<ol> | <ol> | ||
| − | <li>Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601</li> | + | <li><span style="font-size:16px">Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601</span></li> |
| − | <li>Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT</li> | + | <li><span style="font-size:16px">Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT</span></li> |
</ol> | </ol> | ||
</li> | </li> | ||
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<p> </p> | <p> </p> | ||
| − | <p><strong>2. Paper status</strong>: Not yet published (Analysis in progress)</p> | + | <p><span style="font-size:16px"><strong>2. Paper status</strong>: Not yet published (Analysis in progress)</span></p> |
<hr /> | <hr /> | ||
<p> </p> | <p> </p> | ||
| − | <p><strong>3. Analysis result</strong></p> | + | <p><span style="font-size:16px"><strong>3. Analysis result</strong></span></p> |
<ol style="list-style-type:upper-alpha"> | <ol style="list-style-type:upper-alpha"> | ||
| − | <li>Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat</li> | + | <li><span style="font-size:16px">Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat</span></li> |
| − | <li>Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa | + | <li><span style="font-size:16px">Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa</span><br /> |
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| − | + | <img alt="" src="/ckfinder/userfiles/images/6_assembly_stat.PNG" style="height:306px; width:1055px" /><br /> | |
| − | + | <br /> | |
| − | + | <span style="font-size:16px">Due to the low depth PacBio raw data, PromethION long read sequencing was added and is currently being assembled by Hui-su Kim.</span></li> | |
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</ol> | </ol> | ||
Latest revision as of 16:28, 20 August 2019
Box jellyfish (Cubozoa) genome
1. Raw data and project folder information
- Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/
- Raw data information:
- Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata
- Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206
- RNA 2 tissue:
- Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601
- Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT
2. Paper status: Not yet published (Analysis in progress)
3. Analysis result
- Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat
- Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa
Due to the low depth PacBio raw data, PromethION long read sequencing was added and is currently being assembled by Hui-su Kim.
