박승구

Education 

08/2009 ~ 02/2014    Kangwon National University, South Korea
Ph.D. in Department of Biotechnology 

Thesis: Multidimensional integratomic approach in understanding genome evolution, expression and function
Advisor: Prof. Sun Shim Choi

08/2007 ~ 08/2009    Kangwon National University, South Korea
Master of Science in Department of Biotechnology

Thesis: Positive selection signature in the TLR7 family
Advisor: Prof. Sun Shim Choi

03/2001 ~ 08/2007    Kangwon National University, South Korea
Bachelor of Science in Department of Medical Biotechnology
    
Postdoctoral Fellowship
04/2014 ~     Postdoctoral Research Associate, Hannelhalli Lab, University of Maryland Institute for Advanced Computer Studies (UMIACS), University of Maryland, College Park

Mentor: Prof. Sridhar Hannenhalli

Awards
•    09/2008    Outstanding poster in The 17th KOGO Conference. Seoul, Korea
•    11/2008    Outstanding poster in 2008 Korean Society for Bioinformatics and Systems Biology. CheongJu, Korea
•    01/2011    Outstanding poster in Th 9th Asia Pacific Bioinformatics Conference. Inchon,Korea
•    09/2011    Outstanding poster in The 20Th KOGO Conference. Osong, Korea
•    11/2014    Excellent Paper Award in Korean Society for Bioinformatics and Systems Biology

 

Patents
•    Massive Data Merging Compression Apparatus and Method based on Gene Sequence using Binary Notation, Seung Gu Park and Sun Shim Choi, Korea Patent 1015823910000
•    Display Apparatus and Method for DNA Sequence and Comments Information, Seung Gu Park and Sun Shim Cho, Korea Patent 1013764190000 
•    Antibody Structure Sequence Numbering Apparatus and Method based on Next Generation Sequencing Data, Seung Gu Park and Sun Shim Choi, Korea Patent 10-2013-0167798
•    Coding Apparatus and Method for DNA Sequence, Seung Gu Park and Sun Shim Choi, Korea Patent, 10-2012-0045886 
•    Display Apparatus and Method for DNA Sequence and Structure Information, Seung Gu Park and Sun Shim Choi, Korea Patent 10-2012-0045888

 

Publications

•    Nishanth, U. N., Avinas D., Uri, A., PARK, S. G., ... HANNENHALLI, S. (2016). Driver genes in Idiopathic Dilated Cardiomyopathy. Nat Communications (In press)
•    MALIN, J., EZER, D., MA, X., MOUNT, S., KARATHIA, H., PARK, S. G., … HANNENHALLI, S. (2016). Crowdsourcing: Spatial clustering of low-affinity binding sites amplifies in vivo transcription factor occupancy. Nat Communications (In press)
•    PARK, S. G., HANNENHALLI, S. (2015). First intron length in mammals is associated with 5' exon skipping rate. (Unpublished Preprints at BioRxiv)
•    PARK, S. G., HANNENHALLI, S., & CHOI, S. S. (2014). Conservation in first introns is positively associated with the number of exons within genes and the presence of regulatory epigenetic signals. BMC genomics, 15(1), 1.
•    PARK, S.G., PARK, D., JUNG, Y., CHUNG, E. and CHOI, S.S., 2010. Positive selection signatures in the TLR7 family. Genes & Genomics, 32(2), pp. 143-150.
•    PARK, S.G. and CHOI, S.S., 2010. Expression breadth and expression abundance behave differently in correlations with evolutionary rates. BMC evolutionary biology, 10(1), pp. 241.
•    PARK, S.G., KWON, K. and CHOI, S.S., 2012. Analysis of putative miRNA function using a novel approach, GAPPS-miRTarGE. Genes & Genomics, 34(2), pp. 205-216.
•    PARK, D., PARK, J., PARK, S.G., PARK, T. and CHOI, S.S., 2008. Analysis of human disease genes in the context of gene essentiality. Genomics, 92(6), pp. 414-418.
•    MOK, Y., PARK, S.G. and CHOI, S.S., 2012. Comparative analysis of the structural and expressional parameters of microRNA target genes. Gene, 497(1), pp. 103-109.
•    CHO, H., KIM, K.M., HAN, S., CHOE, J., PARK, S.G., CHOI, S.S. and KIM, Y.K., 2012. Staufen1-mediated mRNA decay functions in adipogenesis. Molecular cell, 46(4), pp. 495-506.
•    CHO, H., HAN, S., CHOE, J., PARK, S.G., CHOI, S.S. and KIM, Y.K., 2013. SMG5–PNRC2 is functionally dominant compared with SMG5–SMG7 in mammalian nonsense-mediated mRNA decay. Nucleic acids research, 41(2), pp. 1319-1328.
•    YANG, H., KO, H., YANG, J., KIM, J., SEO, S., PARK, S.G., CHOI, S.S., SEONG, J.K. and KWEON, M., 2013. Interleukin-1 Promotes Coagulation, Which Is Necessary for Protective Immunity in the Lung Against Streptococcus pneumoniae Infection. Journal of Infectious Diseases, 207(1), pp. 50-60.