Difference between revisions of "Archaeal genomics"

From kogic.kr
(Created page with "<p><span class="mw-cite-backlink"><span><b><span style="font-size: large">List of sequenced archaeal genomes</span></b></span></span></p> <p> <a href="http://en.wikipedia.or...")
(No difference)

Revision as of 13:43, 19 July 2012

List of sequenced archaeal genomes

 http://en.wikipedia.org/wiki/List_of_sequenced_archaeal_genomes

 

Project pages and papers

  1. ^ Mardanov AV, Svetlitchnyi VA, Beletsky AV, et al. (August, 2010). "The genome sequence of the crenarchaeon Acidilobus saccharovorans supports a new order, Acidilobales, and suggests an important ecological role in terrestrial acidic hot springs". Appl Environ Microbiol. 76 (16): 5652–5657. DOI:10.1128/AEM.00599-10. PMC2918975. PMID20581186. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2918975.
  2. ^ Kawarabayasi, Y.; Hino, Y; Horikawa, H; Yamazaki, S; Haikawa, Y; Jin-No, K; Takahashi, M; Sekine, M et al. (1999). "Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1". DNA Research 6 (2): 83–101, 145–52. DOI:10.1093/dnares/6.2.83. PMID10382966.
  3. ^ Ravin NV, Mardanov AV, Beletsky AV, et al. (April 2009). "Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis". J Bacteriology 191 (7): 2371–2379. DOI:10.1128/JB.01525-08. PMC2655497. PMID19114480. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2655497.
  4. ^ Brügger K, Chen L, Stark M, et al.' (May 2007). "The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C". Archaea 2 (2): 127–35. PMC2686385. PMID17350933. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2686385.
  5. ^ Podar M, Anderson I, Makarova KS, et al. (2008). "A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans". Genome Biol. 9 (11): R158. DOI:10.1186/gb-2008-9-11-r158. PMC2614490. PMID19000309. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2614490.
  6. ^ Göker M, Held B, Lapidus A, et al. (August 20, 2010). "Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1)". Stand Genomic Sci. 3 (1): 66–75. DOI:10.4056/sigs.1072907. PMC3035270. PMID21304693. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035270.
  7. ^ Anderson I, Göker M, Nolan M, et al. (July 1, 2011). "Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A)". Stand Genomic Sci. 4 (3): 381–392. DOI:10.4056/sigs.2014648. PMC3156397. PMID21886865. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3156397.
  8. ^ Anderson I, Wirth R, Lucas S, et al. (October 15, 2011). "Complete genome sequence of Staphylothermus hellenicus P8". Stand Genomic Sci. 5 (1): 12–20. DOI:10.4056/sigs.2054696. PMC3236042. PMID22180806. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3236042.
  9. ^ Anderson IJ, Dharmarajan L, Rodriguez J, et al. (April 2, 2009). "The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota". BMC Genomics 10: 145. DOI:10.1186/1471-2164-10-145. PMC2678158. PMID19341479. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2678158.
  10. ^ Spring S, Rachel R, Lapidus A, et al. (June 15, 2010). "Complete genome sequence of Thermosphaera aggregans type strain (M11TL)". Stand Genomic Sci. 2 (3): 245–259. DOI:10.4056/sigs.821804. PMC3035292. PMID21304709. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035292.
  11. ^ Extremophiles in press.
  12. ^ Liu LJ, You XY, Zheng H, et al. (July 2011). "Complete genome sequence of Metallosphaera cuprina, a metal sulfide-oxidizing archaeon from a hot spring". J. Bacteriol. 193 (13): 3387-33888. DOI:10.1128/JB.05038-11. PMC3133273. PMID21551305. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3133273.
  13. ^ Auernik KS, Maezato Y, Blum PH, Kelly RM (February 2008). "The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism". Appl Environ Microbiol. 74 (3): 682–692. DOI:10.1128/AEM.02019-07. PMC2227735. PMID18083856. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2227735.
  14. ^ Chen, L.; Brugger, K.; Skovgaard, M.; Redder, P.; She, Q.; Torarinsson, E.; Greve, B.; Awayez, M. et al. (2005). "The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota". J. Bacteriol. 187 (14): 4992–9. DOI:10.1128/JB.187.14.4992-4999.2005. PMC1169522. PMID15995215. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1169522.
  15. ^ a b Guo L, Brügger K, Liu C, et al. (Apr 2011). "Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies". J. Bacteriol. 193 (7): 1672–1680. DOI:10.1128/JB.01487-10. PMC3067641. PMID21278296. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3067641.
  16. ^ a b c d e f g Reno ML, Held NL, Fields CJ, et al. (May 26, 2009). "Biogeography of the Sulfolobus islandicus' pan-genome". PNAS 106 (21): 8605–8610. DOI:10.1073/pnas.0808945106. PMC2689034. PMID19435847. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2689034.
  17. ^ She Q, Singh RK, Confalonieri F, et al. (July 3, 2001). "The complete genome of the crenarchaeon Sulfolobus solfataricus P2". PNAS 98 (14): 7835–7840. DOI:10.1073/pnas.141222098. PMC35428. PMID11427726. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=35428.
  18. ^ Kawarabayasi, Y.; Hino, Y; Horikawa, H; Jin-No, K; Takahashi, M; Sekine, M; Baba, S; Ankai, A et al. (2001). "Complete genome sequence of an aerobic thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain7". DNA Research 8 (4): 123–40. DOI:10.1093/dnares/8.4.123. PMID11572479.
  19. ^ Fitz-Gibbon, S. T.; Ladner, H; Kim, UJ; Stetter, KO; Simon, MI; Miller, JH (2002). "Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum". Proceedings of the National Academy of Sciences 99 (2): 984–9. DOI:10.1073/pnas.241636498. PMC117417. PMID11792869. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=117417.
  20. ^ a b c d e "GOLD". http://www.genomesonline.org.
  21. ^ Anderson I, Rodriguez J, Susanti D, et al. (April 2008). "Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction". J. Bacteriol. 190 (8): 2957–2965. DOI:10.1128/JB.01949-07. PMC2293246. PMID18263724. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2293246.
  22. ^ Siebers B, Zaparty M, Raddatz G, et al. (2011). "The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota". PLoS ONE 6 (10): e24222. DOI:10.1371/journal.pone.0024222. PMID22003381.
  23. ^ Mardanov AV, Gumerov VM, Beletsky AV, et al. (June 2011). "Complete genome sequence of the thermoacidophilic crenarchaeon Thermoproteus uzoniensis 768-20". J. Bacteriol. 193 (12): 3156–3157. DOI:10.1128/JB.00409-11. PMC3133184. PMID21478349. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3133184.
  24. ^ Mavromatis K, Sikorski J, Pabst E, et al. (September 28, 2010). "Complete genome sequence of Vulcanisaeta distributa type strain (IC-017)". Stand Genomic Sci. 3 (2): 117–125. DOI:10.4056/sigs.1113067. PMC3035369. PMID21304741. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035369.
  25. ^ Gumerov VM, Mardanov AV, Beletsky AV, et al. (May 2011). "Complete genome sequence of "Vulcanisaeta moutnovskia" strain 768-28, a novel member of the hyperthermophilic crenarchaeal genus Vulcanisaeta". J. Bacteriol. 193 (9): 2355–2356. DOI:10.1128/JB.00237-11. PMC3133093. PMID21398550. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3133093.
  26. ^ Venter, J. Craig; Klenk, Hans-Peter; Clayton, Rebecca A.; Tomb, Jean-Francois; White, Owen; Nelson, Karen E.; Ketchum, Karen A.; Dodson, Robert J. et al. (1997). "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus". Nature 390 (6658): 364–70. DOI:10.1038/37052. PMID9389475.
  27. ^ von Jan M, Lapidus A, Del Rio TG, et al. (June 15, 2010). "Complete genome sequence of Archaeoglobus profundus type strain (AV18)". Stand Genomic Sci. 2 (3,): 327–346. DOI:10.4056/sigs.942153. PMC3035285. PMID21304717. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035285.
  28. ^ Anderson I, Risso C, Holmes D, et al. (October 15, 2011). "Complete genome sequence of 'Ferroglobus placidus AEDII12DO". Stand Genomic Sci. 5 (1): 50–60. DOI:10.4056/sigs.2225018. PMC3236036. PMID22180810. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3236036.
  29. ^ Roh SW, Nam YD, Nam SH, et al. (September, 2010). "Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon". J Bacteriol. 192 (17): 4528–4529. DOI:10.1128/JB.00663-10. PMC2937367. PMID20601480. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2937367.
  30. ^ Liu H, Wu Z, Li M, et al. (November 2011). "Complete genome sequence of Haloarcula hispanica, a Model Haloarchaeon for studying genetics, metabolism, and virus-host interaction". J. Bacteriol. 193 (21): 6086–6087. DOI:10.1128/JB.05953-11. PMC3194904. PMID21994921. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3194904.
  31. ^ Baliga, N. S.; Bonneau, R; Facciotti, MT; Pan, M; Glusman, G; Deutsch, EW; Shannon, P; Chiu, Y et al. (2004). "Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea". Genome Research 14 (11): 2221–34. DOI:10.1101/gr.2700304. PMC525680. PMID15520287. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=525680.
  32. ^ Pfeiffer F, Schuster SC, Broicher A, et al. (April 2008). "Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1". Genomics 91 (4): 335–346. DOI:10.1016/j.ygeno.2008.01.001. PMID18313895.
  33. ^ Ng, W. V.; Kennedy, SP; Mahairas, GG; Berquist, B; Pan, M; Shukla, HD; Lasky, SR; Baliga, NS et al. (2000). "Genome sequence of Halobacterium species NRC-1". Proceedings of the National Academy of Sciences 97 (22): 12176–81. DOI:10.1073/pnas.190337797. PMC17314. PMID11016950. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=17314.
  34. ^ Jiang X, Wang S, Cheng H, et al. (December 2011). "Genome sequence of Halobiforma lacisalsi AJ5, an extremely halophilic archaeon which harbors a bop gene". J. Bacteriol. 193 (24): 7023–7024. DOI:10.1128/JB.06282-11. PMC3232858. PMID22123770. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3232858.
  35. ^ Hartman, Amber L.; Norais, CéDric; Badger, Jonathan H.; Delmas, StéPhane; Haldenby, Sam; Madupu, Ramana; Robinson, Jeffrey; Khouri, Hoda et al. (2010). Friedberg, Iddo. ed. "The complete genome sequence of Haloferax volcanii DS2, a Model Archaeon". PLoS ONE 5 (3): e9605. DOI:10.1371/journal.pone.0009605. PMC2841640. PMID20333302. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2841640.
  36. ^ Malfatti S, Tindall BJ, Schneider S, et al. (September 24, 2009). "Complete genome sequence of Halogeometricum borinquense type strain (PR3)". Stand Genomic Sci. 1 (2): 150–159. DOI:10.4056/sigs.23264. PMC3035229. PMID21304651. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035229.
  37. ^ Tindall BJ, Schneider S, Lapidus A, et al. (November 22, 2009). "Complete genome sequence of Halomicrobium mukohataei type strain (arg-2)". Stand Genomic Sci. 1 (3): 270–277. DOI:10.4056/sigs.42644. PMC3035239. PMID21304667. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035239.
  38. ^ Dyall-Smith ML, Pfeiffer F, Klee K, et al. (2011). "Haloquadratum walsbyi: limited diversity in a global pond". PLoS ONE 6 (6): e20968. DOI:10.1371/journal.pone.0020968. PMC3119063. PMID21701686. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3119063.
  39. ^ Bolhuis H, Palm P, Wende A, et al. (July 4, 2006). "The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity". BMC Genomics 7: 169. DOI:10.1186/1471-2164-7-169. PMID16820047.
  40. ^ Antunes A, Alam I, Bajic VB, Stingl U (September 2011). "Genome sequence of Halorhabdus tiamatea, the first archaeon isolated from a deep-sea anoxic brine lake". J. Bacteriol. 193 (17): 4553–4554. DOI:10.1128/JB.05462-11. PMC3165509. PMID21705593. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3165509.
  41. ^ "Complete genome sequence of Halorhabdus utahensis type strain (AX-2)". Stand Genomic Sci. 1 (3): 218–225. November 22, 2009. DOI:10.4056/sigs.31864. PMC3035240. PMID21304660. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035240.
  42. ^ Saunders, E.; Tindall, B. J.; Fähnrich, R.; Lapidus, A.; Copeland, A.; Del Rio, T. G.; Lucas, S.; Chen, F. et al. (2010). "Complete genome sequence of Haloterrigena turkmenica type strain (4kT)". Standards in Genomic Sciences 2 (1): 107–116. DOI:10.4056/sigs.681272. PMC3035258. PMID21304683. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035258. edit
  43. ^ Goo AH, Roach J, Glusman G, et al. (January 12, 2004). "Low-pass sequencing for microbial comparative genomics". BMC Genomics 5: 3. DOI:10.1186/1471-2164-5-3. PMID14718067.
  44. ^ Falb, M.; Pfeiffer, F; Palm, P; Rodewald, K; Hickmann, V; Tittor, J; Oesterhelt, D (2005). "Living with two extremes: Conclusions from the genome sequence of Natronomonas pharaonis". Genome Research 15 (10): 1336–43. DOI:10.1101/gr.3952905. PMC1240075. PMID16169924. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1240075.
  45. ^ Smith, DR; D; D; L; D; A; B; B et al. (1997). "Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics". The Journal of Bacteriology 179 (22): 7135–55. PMC179657. PMID9371463. http://jb.asm.org/cgi/pmidlookup?view=long&pmid=9371463.
  46. ^ Leahy SC, Kelly WJ, Altermann E, et al. (January 28, 2010). "The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions". PLoS ONE 5 (1): e8926. DOI:10.1371/journal.pone.0008926. PMC2812497. PMID20126622. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2812497.
  47. ^ Samuel BS, Hansen EE, Manchester JK, et al. (June 19, 2007). "Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut". PNAS 104 (25): 10643–8. DOI:10.1073/pnas.0704189104. PMC1890564. PMID17563350. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1890564.
  48. ^ a b c d e f g h i j k l m n o p q r s t Hansen EE, Lozupone CA, Rey FE, et al. (March 15, 2011). "Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins". PNAS 108 (Suppl 1): 4599–4606. DOI:10.1073/pnas.1000071108. PMC3063581. PMID21317366. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3063581.
  49. ^ Fricke, W. F.; Seedorf, H.; Henne, A.; Kruer, M.; Liesegang, H.; Hedderich, R.; Gottschalk, G.; Thauer, R. K. (2005). "The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis". J. Bacteriol. 188 (2): 642–58. DOI:10.1128/JB.188.2.642-658.2006. PMC1347301. PMID16385054. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1347301.
  50. ^ Liesegang, H.; Kaster, A. -K.; Wiezer, A.; Goenrich, M.; Wollherr, A.; Seedorf, H.; Gottschalk, G.; Thauer, R. K. (2010). "Complete Genome Sequence of Methanothermobacter marburgensis, a Methanoarchaeon Model Organism". Journal of Bacteriology 192 (21): 5850–5851. DOI:10.1128/JB.00844-10. PMC2953689. PMID20802048. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2953689. edit
  51. ^ Anderson I, Djao OD, Misra M, et al. (November 20, 2010). "Complete genome sequence of Methanothermus fervidus type strain (V24S)". Stand Genomic Sci. 3 (3): 315–324. DOI:10.4056/sigs.1283367. PMC3035299. PMID21304736. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035299.
  52. ^ Bult, C. J.; White, O.; Olsen, G. J.; Zhou, L.; Fleischmann, R. D.; Sutton, G. G.; Blake, J. A.; Fitzgerald, L. M. et al. (1996). "Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii". Science 273 (5278): 1058–73. DOI:10.1126/science.273.5278.1058. PMID8688087.
  53. ^ Hendrickson EL, Kaul R, Zhou Y, et al. (October 2004). "Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis". J Bacteriol. 186 (20): 6956–6969. DOI:10.1128/JB.186.20.6956-6969.2004. PMC522202. PMID15466049. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=522202.
  54. ^ Wang X, Greenfield P, Li D, et al. (October 2011). "Complete genome sequence of a nonculturable Methanococcus maripaludis strain extracted in a metagenomic survey of petroleum reservoir fluids". J Bacteriol. 193 (19): 6956–6969. DOI:10.1128/JB.05835-11. PMID21914896.
  55. ^ "Candidatus Methanoregula boonei 6A8". http://genome.jgi-psf.org/metbo/metbo.info.html
  56. ^ Erkel C, Kube M, Reinhardt R, Liesack W (July 21, 2006). "Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere". Science 313 (5785): 370–372. DOI:10.1126/science.1127062. PMID16857943.
  57. ^ Sakai, S.; Imachi, H.; Hanada, S.; Ohashi, A.; Harada, H.; Kamagata, Y. (2008). "Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. Nov". International Journal of Systematic and Evolutionary Microbiology 58 (4): 929–936. DOI:10.1099/ijs.0.65571-0. PMID18398197. edit
  58. ^ Sakai S, Takaki Y, Shimamura S, et al. (2011). "Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales". PLoS ONE 6 (7): e22898. DOI:10.1371/journal.pone.0022898. PMC3146512. PMID21829548. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3146512.
  59. ^ Lu, Z.; Lu, Y. (2012). "Complete Genome Sequence of a Thermophilic Methanogen, Methanocella conradii HZ254, Isolated from Chinese Rice Field Soil". Journal of Bacteriology 194 (9): 2398–2399. DOI:10.1128/JB.00207-12. PMC3347084. PMID22493204. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3347084. edit
  60. ^ Allen MA, Lauro FM, Williams TJ, et al. (September 2009). "The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation". ISME J. 3 (9): 1012–1035. DOI:10.1038/ismej.2009.45. PMID19404327.
  61. ^ Anderson IJ, Sieprawska-Lupa M, Goltsman E, et al. (September 24, 2009). "Complete genome sequence of Methanocorpusculum labreanum type strain Z". Stand Genomic Sci. 1 (2): 197–203. DOI:10.4056/sigs.35575. PMC3035222. PMID21304657. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035222.
  62. ^ Anderson IJ, Sieprawska-Lupa M, Lapidus A, et al. (September 25, 2009). "Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1". Stand Genomic Sci. 1 (2): 189–196. DOI:10.4056/sigs.32535. PMC3035220. PMID21304656. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035220.
  63. ^http://genome.jgi-psf.org/metev/metev.info.html
  64. ^ Spring S, Scheuner C, Lapidus A, et al. (December 23, 2010). "The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments". Archaea 2010: 690737. DOI:10.1155/2010/690737. PMC3017947. PMID21234345. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3017947.
  65. ^ Brambilla E, Djao OD, Daligault H, et al. (October 27, 2010). "Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847)". Stand Genomic Sci. 3 (2): 203–211. DOI:10.4056/sigs.1183143. PMC3035365. PMID21304750. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3035365.
  66. ^ Galagan, J. E.; Nusbaum, C; Roy, A; Endrizzi, MG; MacDonald, P; Fitzhugh, W; Calvo, S; Engels, R et al. (2002). "The Genome of M. acetivorans Reveals Extensive Metabolic and Physiological Diversity". Genome Research 12 (4): 532–42. DOI:10.1101/gr.223902. PMC187521. PMID11932238. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=187521.
  67. ^ Maeder DL, Anderson I, Brettin TS, et al. (November, 2006). "The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei' reveals extensive rearrangement within methanosarcinal genomes". J. Bacteriology 188 (22): 7922–7931. DOI:10.1128/JB.00810-06. PMC1636319. PMID16980466. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1636319.
  68. ^ Deppenmeier, U; Johann, A; Hartsch, T; Merkl, R; Schmitz, RA; Martinez-Arias, R; Henne, A; Wiezer, A et al. (2002). "The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea". Journal of molecular microbiology and biotechnology 4 (4): 453–61. PMID12125824.
  69. ^ Slesarev, A. I.; Mezhevaya, KV; Makarova, KS; Polushin, NN; Shcherbinina, OV; Shakhova, VV; Belova, GI; Aravind, L et al. (2002). "The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens". Proceedings of the National Academy of Sciences 99 (7): 4644–9. DOI:10.1073/pnas.032671499. PMC123701. PMID11930014. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=123701.
  70. ^ Gaspin, C; Cavaillé, J; Erauso, G; Bachellerie, JP (2000). "Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes". Journal of Molecular Biology 297 (4): 895–906. DOI:10.1006/jmbi.2000.3593. PMID10736225.
  71. ^ Maeder, Dennis L.; Weiss, Robert B.; Dunn, Diane M.; Cherry, Joshua L.; González, Juan M.; DiRuggiero, Jocelyne; Robb, Frank T. (1999). "Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences". Genetics 152 (4): 1299–305. PMC1460691. PMID10430560. http://www.genetics.org/cgi/pmidlookup?view=long&pmid=10430560.
  72. ^ Kawarabayasi, Y.; Sawada, M; Horikawa, H; Haikawa, Y; Hino, Y; Yamamoto, S; Sekine, M; Baba, S et al. (1998). "Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3". DNA Research 5 (2): 55–76. DOI:10.1093/dnares/5.2.55. PMID9679194.
  73. ^ Jun X, Lupeng L, Minjuan X, et al. (August 2011). "Complete genome sequence of the obligate piezophilic hypertheromphilic archaeon Pyrococcus yayanosii CH1". J. Bacteriol. 193 (16): 4297–4298. DOI:10.1128/JB.05345-11. PMC3147706. PMID21705594. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3147706.
  74. ^ Vannier P, Marteinsson VT, Fridjonsson OH, et al. (March 2011). "Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP". J. Bacteriol. 193 (6): 1481–1482. DOI:10.1128/JB.01490-10. PMC3067617. PMID21217005. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3067617.
  75. ^ Zivanovic Y, Armengaud J, Lagorce A, et al. (2009). "Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea". Genome Biol. 10 (6): R70. DOI:10.1186/gb-2009-10-6-r70. PMC2718504. PMID19558674. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2718504.
  76. ^ Fukui T, Atomi H, Kanai T, et al. (March 2005). "Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes". Genome Res. 15 (3): 352–363. DOI:10.1101/gr.3003105. PMC551561. PMID15710748. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=551561.
  77. ^ Lee HS, Kang SG, Bae SS, et al. (November 2008). "The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism". J. Bacteriol. 190 (22): 7491–7499. DOI:10.1128/JB.00746-08. PMC2576655. PMID18790866. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2576655.
  78. ^ Mardanov AV, Ravin NV, Svetlitchnyi VA, et al. (July 2009). "Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis". Appl Environ Microbiol. 75 (13): 4580–4588. DOI:10.1128/AEM.00718-09. PMC2704819. PMID19447963. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2704819.
  79. ^ Wang X, Gao Z, Xu X, Ruan L (October 2011). "Complete genome sequence of Thermococcus sp. strain 4557, a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area". J. Bacteriol. 193 (19): 5544–5545. DOI:10.1128/JB.05851-11. PMC3187469. PMID21914870. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3187469.
  80. ^ Oger P, Sokolova TG, Kozhevnikova DA, et al. (December 2011). "Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide". J. Bacteriol. 193 (24): 7019–7020. DOI:10.1128/JB.06259-11. PMC3232831. PMID22123768. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3232831.
  81. ^ Allen EE, Tyson GW, Whitaker RJ, et al. (February 6, 2007). "Genome dynamics in a natural archaeal population". PNAS 104 (6): 1883–1888. DOI:10.1073/pnas.0604851104. PMC1794283. PMID17267615. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1794283.
  82. ^ Fütterer O, Angelov A, Liesegang H, et al. (June 15, 2004). "Genome sequence of Picrophilus torridus and its implications for life around pH 0". PNAS 101 (24): 9091–9096. DOI:10.1073/pnas.0401356101. PMC428478. PMID15184674. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=428478.
  83. ^ Baumeister, Wolfgang; Ruepp, Andreas; Graml, Werner; Santos-Martinez, Martha-Leticia; Koretke, Kristin K.; Volker, Craig; Mewes, H. Werner; Frishman, Dmitrij et al. (2000). "The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum". Nature 407 (6803): 508–13. DOI:10.1038/35035069. PMID11029001.
  84. ^ Kawashima, T.; Amano, N; Koike, H; Makino, S; Higuchi, S; Kawashima-Ohya, Y; Watanabe, K; Yamazaki, M et al. (2000). "Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium". PNAS 97 (26): 14257–62. DOI:10.1073/pnas.97.26.14257. PMC18905. PMID11121031. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=18905.
  85. ^ Elkins JG, Podar M, Graham DE, et al. (June 10, 2008). "A korarchaeal genome reveals insights into the evolution of the Archaea". PNAS 105 (23): 8102–8107. DOI:10.1073/pnas.0801980105. PMC2430366. PMID18535141. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2430366.
  86. ^ Waters, E.; Hohn, MJ; Ahel, I; Graham, DE; Adams, MD; Barnstead, M; Beeson, KY; Bibbs, L et al. (2003). "The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism". Proceedings of the National Academy of Sciences 100 (22): 12984–8. DOI:10.1073/pnas.1735403100. PMC240731. PMID14566062. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=240731.
  87. ^ Hallam SJ, Konstantinidis KT, Putnam N, et al. (November 28, 2006). "Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum". PNAS 103 (48): 18296–18301. DOI:10.1073/pnas.0608549103. PMC1643844. PMID17114289. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1643844.
  88. ^ Hallam SJ, Mincer TJ, Schleper C, et al. (April, 2006). "Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota". PLoS Biol. 4 (4): e95. DOI:10.1371/journal.pbio.0040095. PMC1403158. PMID16533068. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1403158.
  89. ^ Blainey PC, Mosier AC, Potanina A, et al. (22 February 2011). "Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis". PLoS ONE 6 (2): e16626. DOI:10.1371/journal.pone.0016626. PMC3043068. PMID21364937. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3043068.
  90. ^ Walker CB, de la Torre JR, Klotz MG, et al. (May 11, 2010). "Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea". PNAS 107 (19): 8818–8823. DOI:10.1073/pnas.0913533107. PMC2889351. PMID20421470. //www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=2889351.
Retrieved from "http://kogic.kr/index.php?title=Archaeal_genomics&oldid=4517"