김학민

 

 

 Education and training

 2015-present                             Ph.D course, UNIST

 2010-2012                                  M.S in Bioinformatics, Soongsil University

 2003-2009                                  B.S in Bioinformatics,  Sangmyung University

    

Professional Experiences

 2011.02-2014.07                        Senior Researcher, Personal Genomics Institute, Genome Research Foundation, Cheongju, Korea.

 2014.07-2015.08                           Researcher, The Genomics Institute, Ulsan, Korea.

  

Work Experiences

- Bioinformatics: de novo genome assembly, comparative genomics, cancer genome analysis 

 

List of Publications

 -(co-first author) Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly.

 Soonok Kim, Yun Sung Cho, Hak-Min Kim, Oksung Chung, Hyunho Kim, Sungwoong Jho, Hong Seomun, Jeongho Kim, Woo Young Bang, Changmu Kim, Junghwa An, Chang Hwan Bae, Youngjune Bhak, Sungwon Jeon, Hyejun Yoon, Yumi Kim, JeHoon Jun, HyeJin Lee, Suan Cho, Olga Uphyrkina, Aleksey Kostyria, John Goodrich, Dale Miquelle, Melody Roelke, John Lewis, Andrey Yurchenko, Anton Bankevich, Juok Cho, Semin Lee, Jeremy S. Edwards, Jessica A. Weber, Jo Cook, Sangsoo Kim, Hang Lee, Andrea Manica, Ilbeum Lee, Stephen J. O’Brien, Jong Bhak and Joo-Hong Yeo Genome Biol. 17:211 (2016).

 

 -(co-author) The first whole genome and transcriptome of the Cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures.

 Oksung Chung, Seondeok Jin, Yun Sung Cho, Jeongheui Lim, Hyunho Kim, Sungwoong Jho, Hak-Min Kim, JeHoon Jun, HyeJin Lee, Alvin Chon, Junsu Ko, Jeremy Edwards, Jessica A. Weber, Kyudong Han, Stephen J. O’Brien, Andrea Manica, Jong Bhak and Woon Kee Paek. Genome Biol. Accepted (2015).

 

-(co-author) Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan.

 Muhammad Ilyas, Jong-Soo Kim, Jesse Cooper, Young-Ah Shin, Hak-Min Kim, Yun Sung Cho, Seungwoo Hwang, Hyunho Kim, Jaewoo Moon, Oksung Chung, JeHoon Jun, Achal Rastogi, Sanghoon Song, Junsu Ko, Andrea Manica, Ziaur Rahman, Tayyab Husnain and Jong Bhak. BMC Genomics. 16:172 (2015).

 

-(co-author) Whole genome sequence and analysis of the Marwari horse breed and its genetic origin.

 JeHoon Jun, Yun Sung Cho, Haejin Hu, Hak-Min Kim, Sungwoong Jho, Priyvrat Gadhvi, Kyung Mi Park, Jeongheui Lim, Woon Kee Paek, Kyudong Han, Andrea Manica, Jeremy S Edwards, Jong Bhak. BMC Genomics. 15(Suppl 9), S4 (2014).

 
-(co-author) Homozygous deletions at 3p22, 5p14, 6q15, and 9p21 result in aberrant expression of tumor suppressor genes in gastric cancer.

Lee B, Yoon K, Lee S, Kang JM, Kim J, Shim SH, Kim HM, Song S, Naka K, Kim AK, Yang HK, Kim SJ.  Genes Chromosomes Cancer, 54, 142-155 (2015)

 

-(co author) Whole-genome analysis of a patient with early-stage small-cell lung cancer. 

Han JY, Lee YS, Kim BC, Lee GK, Lee S, Kim EH, Kim HM, Bhak J. Pharmacogenomics J. 14, 503-508 (2014)

 

-(co-author) Variation block-based genomics method for crop plants.

Yul Ho Kim, Hyang Mi Park, Tae-Young Hwang, Seuk Ki Lee, Man Soo Choi, Sungwoong Jho, Seungwoo Hwang, Hak-Min Kim, Dongwoo Lee, Byoung-Chul Kim, Chang Pyo Hong, Yun Sung Cho, Hyunmin Kim, Kwang Ho Jeong, Min Jung Seo, Hong Tai Yun, Sun Lim Kim, Young-Up Kwon, Wook Han Kim, Hye Kyung Chun, Sang Jong Lim, Young-Ah Shin, Ik-Young Choi, Young Sun Kim, Ho-Sung Yoon, Suk-Ha Lee, Sunghoon Lee. BMC Genomics. 15, 477 (2014).

 

-(co-author) Genomic profile analysis of diffuse-type gastric cancers.

Yeon-Su Lee, Yun Sung Cho, Geon Kook Lee, Sunghoon Lee, Young-Woo Kim, Sungwoong Jho, Hak-Min Kim, Seung-Hyun Hong, Jung-Ah Hwang, Sook-young Kim, Dongwan Hong, Il Ju Choi, Byung Chul Kim, Byoung-Chul Kim, Chul Hong Kim, Hansol Choi, Youngju Kim, Kyung Wook Kim, Gu Kong, Hyung Lae Kim, Jong Bhak, Seung Hoon Lee, Jin Soo Lee. Genome Biol. 15, R55 (2014).

 

-(co-author) Minke whale genome and aquatic adaptation in cetaceans.

Hyung-Soon Yim, Yun Sung Cho, Xuanmin Guang, Sung Gyun Kang, Jae-Yeon Jeong, Sun-Shin Cha, Hyun-Myung Oh, Jae-Hak Lee, Eun Chan Yang, Kae Kyoung Kwon, Yun Jae Kim, Tae Wan Kim, Wonduck Kim, Jeong Ho Jeon, Sang-Jin Kim, Dong Han Choi, Sungwoong Jho, Hak-Min Kim, Junsu Ko, Hyunmin Kim, Young-Ah Shin, Hyun-Ju Jung, Yuan Zheng, Zhuo Wang, Yan Chen, Ming Chen, Awei Jiang, Erli Li, Shu Zhang, Haolong Hou, Tae Hyung Kim, Lili Yu, Sha Liu, Kung Ahn, Jesse Cooper, Sin-Gi Park, Chang Pyo Hong, Wook Jin, Heui-Soo Kim, Chankyu Park, Kyooyeol Lee, Sung Chun, Phillip A Morin, Stephen J O’Brien, Hang Lee, Jumpei Kimura, Dae Yeon Moon, Andrea Manica, Jeremy Edwards, Byung Chul Kim, Sangsoo Kim, Jun Wang, Jong Bhak, Hyun Sook Lee, Jung-Hyun Lee. Nat. Genet. 46, 88-92 (2014).

 

-(co-first author) Whole genome comparison of donor and cloned dogs.

Hak-Min Kim, Yun Sung Cho, Hyunmin Kim, Sungwoong Jho, Bongjun Son, Joung Yoon Choi, Sangsoo Kim, Byeong Chun Lee, Jong Bhak, Goo Jang. Sci. Rep. 3, 2998 (2013).

 

-(co-author)  The tiger genome and comparative analysis with lion and snow leopard genomes.

Cho YS, Hu L, Hou H, Lee H, Xu J, Kwon S, Oh S, Kim HM, Jho S, Kim S, Shin YA, Kim BC, Kim H, Kim CU, Luo SJ, Johnson WE, Koepfli KP, Schmidt-Küntzel A, Turner JA, Marker L, Harper C, Miller SM, Jacobs W, Bertola LD, Kim TH, Lee S, Zhou Q, Jung HJ, Xu X, Gadhvi P, Xu P, Xiong Y, Luo Y, Pan S, Gou C, Chu X, Zhang J, Liu S, He J, Chen Y, Yang L, Yang Y, He J, Liu S, Wang J, Kim CH, Kwak H, Kim JS, Hwang S, Ko J, Kim CB, Kim S, Bayarlkhagva D, Paek WK, Kim SJ, O'Brien SJ, Wang J, Bhak J. Nat. Commun. 4, 2433 (2013).

 

-(co-author)  Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers.

Yoon K, Lee S, Han TS, Moon SY, Yun SM, Kong SH, Jho S, Choe J, Yu J, Lee HJ, Park JH, Kim HM, Lee SY, Park J, Kim WH, Bhak J, Yang HK, Kim SJ. Genome Research, 23, 1109-1117 (2013)

 

-(co-author)  Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse.

Kim H, Lee T, Park W, Lee JW, Kim J, Lee BY, Ahn H, Moon S, Cho S, Do KT, Kim HS, Lee HK, Lee CK, Kong HS, Yang YM, Park J, Kim HM, Kim BC, Hwang S, Bhak J, Burt D, Park KD, Cho BW, Kim H. DNA Research, 20, 287-298 (2013)

 

-(co-author) Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq.

Park KD, Park J, Ko J, Kim BC, Kim HS, Ahn K, Do KT, Choi H, Kim HM, Song S, Lee S, Jho S, Kong HS, Yang YM, Jhun BH, Kim C, Kim TH, Hwang S, Bhak J, Lee HK, Cho BW. BMC Genomics, 13, 473 (2012)

 

-(co-author) COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System.

Jho S, Kim BC, Ghang H, Kim JH, Park D, Kim HM, Jung SY, Yoo KY, Kim HJ, Lee S, Bhak J. BMC Genomics. 10(Suppl 3), S35 (2009)

 

Patents

- (발명자) 백색 털 형질에 대한 신규 단일염기변이 마커 (101480207, 대한민국 특허청 등록), 2014

- (발명자) 저산소증 적응 형질에 대한 신규 단일염기변이 마커 (101480208, 대한민국 특허청 등록), 2014