Difference between revisions of "Hak-Min Kim SMA"

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(Created page with "<p><span style="font-size:20px"><strong>Malay jellyfish genome</strong></span></p> <hr /> <p> </p> <p><span style="font-size:16px"><strong>1. Raw data and project folder i...")
 
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Latest revision as of 16:17, 20 August 2019

Malay jellyfish genome

 

1. Raw data and project folder information

  1. Project folder: Shark서버 /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03
  2. Raw data information:
    1. PacBio: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/Falcon_input
    2. Short reads: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/Shortreads
    3. RNA 4 stages and 3 tissue:
      1. 4 stages (polyp, strobila, ephyra, medusa): /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/RNA
      2. 3 tissue (bell, oral_arm, tentacle): /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/RNA

 

2. Paper status: Not yet published (Analysis in progress)

 

3. Analysis result

  1. Assembly result: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/SMA_genome_HM2/1.Assembly/1.Assembled_genome/SMA_genome_HM2.genome.fa
  2. Annotation result:
    1. Gene set: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/5.GenePrediction_final
    2. Repeat annotation: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/SMA_genome_HM2/3.rmlib_RepeatModeler/

 

4. Methods

  1. Assembly




     
  2. Gene prediction


     
  3. Repeat annotation

 

 

 

 

 

 

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