Difference between revisions of "Hak-Min Kim BOX"
From kogic.kr
(Created page with "<p><strong>Box jellyfish (Cubozoa) genome</strong></p> <hr /> <p> </p> <p><strong>1. Raw data and project folder information</strong></p> <ol style="list-style-type:upper...") |
(No difference)
|
Revision as of 16:24, 20 August 2019
Box jellyfish (Cubozoa) genome
1. Raw data and project folder information
- Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/
- Raw data information:
- Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata
- Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206
- RNA 2 tissue:
- Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601
- Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT
2. Paper status: Not yet published (Analysis in progress)
3. Analysis result
- Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat
- Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa
Read correction cutoff
11K
Assembly used read cutoff
11K
12K
13K
14K
15K
# of sequences
10240 ea
9396 ea
8587 ea
7594 ea
6786 ea
Total bases
1284987375 bp
1166025763 bp
1045513771 bp
909583732 bp
775344685 bp
Longest length
1333152 bp
997040 bp
1183633 bp
1116149 bp
960575 bp
Shortest length
11522 bp
12380 bp
13566 bp
14660 bp
15238 bp
N50
183,372
181,743
177,304
172,930
161,564
GC contents
39.07%
39.07%
39.08%
39.07%
39.07%
N bases (gaps)
0.00%
0.00%
0.00%
0.00%
0.00%
