Difference between revisions of "Hak-Min Kim BOX"
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<p><span style="font-size:20px"><strong>Box jellyfish (Cubozoa) genome</strong></span></p> | <p><span style="font-size:20px"><strong>Box jellyfish (Cubozoa) genome</strong></span></p> | ||
Latest revision as of 16:28, 20 August 2019
Box jellyfish (Cubozoa) genome
1. Raw data and project folder information
- Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/
- Raw data information:
- Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata
- Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206
- RNA 2 tissue:
- Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601
- Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT
2. Paper status: Not yet published (Analysis in progress)
3. Analysis result
- Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat
- Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa
Due to the low depth PacBio raw data, PromethION long read sequencing was added and is currently being assembled by Hui-su Kim.
