Hak-Min Kim BOX

Box jellyfish (Cubozoa) genome

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1. Raw data and project folder information

1. Project folder: Shark서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/
2. Raw data information:
   1. Pacbio: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata
   2. Short reads: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/Genome/Sample_Cubic-jellyfish-161206
   3. RNA 2 tissue:
      1. Medusa tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/MedusaBell_20180601
      2. Tentacle tissue: /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/0.Rawdata/RNA/Tentacle_20180611/1.RawData/Sample_TN1601R0105--GAGTGGAT

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2. Paper status: Not yet published (Analysis in progress)

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3. Analysis result

1. Genome size estimation result: Tiger서버 /BiO/Research/Project1/TGI-BoxJelly-Genome-2017-01/5.KmerAnalysis/TGI-BoxJelly-Genome-2017-01.K19.freq.stat
2. Assembly result: Orchid서버 /BiO/Research/Project1/TGI-BoxJellyfish-Genome-2018-07/1.Pacbio_Falcon_NonFilter/11K_11K/2-asm-falcon_11K_13K/p_ctg.fa

   Read correction cutoff	11K
   Assembly used read cutoff	11K	12K	13K	14K	15K
   # of sequences	10240 ea	9396 ea	8587 ea	7594 ea	6786 ea
   Total bases	1284987375 bp	1166025763 bp	1045513771 bp	909583732 bp	775344685 bp
   Longest length	1333152 bp	997040 bp	1183633 bp	1116149 bp	960575 bp
   Shortest length	11522 bp	12380 bp	13566 bp	14660 bp	15238 bp
   N50	183,372	181,743	177,304	172,930	161,564
   GC contents	39.07%	39.07%	39.08%	39.07%	39.07%
   N bases (gaps)	0.00%	0.00%	0.00%	0.00%	0.00%