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생정보분석 프로그램

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Contents

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  • 1 Assembly Program
  • 2 Fastq Trimming
  • 3 Sequence Alignment
  • 4 Telomere Length Estimation
  • 5 Population Analysis
  • 6 Gene Prediction / Annotation
  • 7 Genome Assembly Assessment Program
  • 8 Gene Clustering
  • 9 Sex determination
  • 10 Horizonatal gene transfer

Assembly Program

  • Falcon
  • Celera-assembler

Fastq Trimming

  • leeHom

Sequence Alignment

 

Telomere Length Estimation

  • Telseq
  • Computel

Population Analysis

  • PSMC
  • MSMC
  • DiCal
  • Structure
  • Admixtool

Gene Prediction / Annotation

  •  Augustus
  •  GeneMark
  •  SNAP
  •  Maker
  •  Braker1

Genome Assembly Assessment Program

  • CEGMA
  • BUSCO

Gene Clustering

 

Sex determination

  • For human sample
  • For animal sample

Horizonatal gene transfer

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  • This page was last edited on 18 September 2018, at 21:47.
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