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Phenotype association SNPs

9,948 bytes added, 14:11, 8 May 2018
Created page with "<p>This page is for phenotype association SNPs.<br />  </p> <table border="1" cellpadding="1" cellspacing="1" style="width:1000px"> <tbody> <tr> <td>Phenotype</td> ..."
<p>This page is for phenotype association SNPs.<br />
&nbsp;</p>

<table border="1" cellpadding="1" cellspacing="1" style="width:1000px">
<tbody>
<tr>
<td>Phenotype</td>
<td>Gene</td>
<td>rs number</td>
<td>Frequency</td>
<td>Etc</td>
</tr>
<tr>
<td>Skin color</td>
<td>SLC24A5</td>
<td>[https://www.snpedia.com/index.php/Rs1426654 rs1426654]</td>
<td>
<p><span style="background-color:rgb(255,255,255); color:rgb(205,133,63)">(A;A)</span><span style="background-color:rgb(255,255,255); color:rgb(51,51,51)">&nbsp;</span><span style="background-color:rgb(255,255,255); color:rgb(32,208,32)">(A;G)</span><span style="background-color:rgb(255,255,255); color:rgb(51,51,51)">&nbsp;</span><span style="background-color:rgb(255,255,255); color:rgb(0,0,255)">(G;G)</span><br />
<img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:100.0,0.0,0.0,0.0,0.0,0.0,0.0,89.0,0.9,33.3,9.6,99.0,27.65|0.0,4.4,1.8,2.7,31.6,4.4,6.4,11.0,12.8,49.1,44.9,1.0,14.175|0.0,95.6,98.2,97.3,68.4,95.6,93.6,0.0,86.2,17.5,45.5,0.0,58.158333333333&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" style="height:199px; width:275px" /></p>
</td>
<td>from SNPedia</td>
</tr>
<tr>
<td>Skin color</td>
<td>SLC24A2</td>
<td>[https://www.snpedia.com/index.php/Rs16891982 rs16891982]</td>
<td>
<p><span style="background-color:rgb(255,255,255); color:rgb(205,133,63)">(C;C)</span><span style="background-color:rgb(255,255,255); color:rgb(51,51,51)">&nbsp;</span><span style="background-color:rgb(255,255,255); color:rgb(32,208,32)">(C;G)</span><span style="background-color:rgb(255,255,255); color:rgb(51,51,51)">&nbsp;</span><span style="background-color:rgb(255,255,255); color:rgb(0,0,255)">(G;G)</span><br />
<img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:0.0,97.7,100.0,100.0,0.0,97.7,0.0,0.0,0.0,0.0,0.0,0.0,79.08|3.2,2.3,0.0,0.0,0.0,2.3,0.0,0.0,0.0,0.0,0.0,0.0,1.56|96.8,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,19.36&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" style="height:189px; width:275px" /></p>

<p>&nbsp;</p>
</td>
<td>from SNPedia</td>
</tr>
<tr>
<td>Skin color</td>
<td>SLC24A2</td>
<td>[https://www.snpedia.com/index.php/Rs26722 rs26722]</td>
<td><span style="background-color:rgb(255,255,255); color:rgb(205,133,63)">(C;C)</span><span style="background-color:rgb(255,255,255); color:rgb(51,51,51)">&nbsp;</span><span style="background-color:rgb(255,255,255); color:rgb(32,208,32)">(C;T)</span><span style="background-color:rgb(255,255,255); color:rgb(51,51,51)">&nbsp;</span><span style="background-color:rgb(255,255,255); color:rgb(0,0,255)">(T;T)</span><br />
<img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:99.1,35.8,43.8,88.4,91.2,35.8,38.5,65.3,93.6,43.9,79.5,98.0,67.741666666667|0.9,51.1,39.3,11.6,8.8,51.1,43.1,29.7,6.4,45.6,19.2,2.0,25.733333333333|0.0,13.1,17.0,0.0,0.0,13.1,18.3,5.0,0.0,10.5,1.3,0.0,6.525&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" style="height:203px; width:275px" /></td>
<td>from SNPedia</td>
</tr>
<tr>
<td>Skin and Hair&nbsp;color</td>
<td>MC1R</td>
<td>[https://www.snpedia.com/index.php/Rs885479 rs885479]</td>
<td>
<p><span style="color:#daa520">(C;C)</span> <span style="color:#00ff00">(C;T)</span> <span style="color:#3300cc">(T;T)&nbsp;</span></p>

<p><img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:0.0,37.0,56.6,0.0,0.0,37.0,39.3,1.0,0.9,12.3,0.6,0.0,15.391666666667|19.6,56.3,37.2,2.1,5.3,56.3,50.5,3.0,0.0,47.4,0.0,4.0,23.475|80.4,6.7,6.2,97.9,94.7,6.7,10.3,96.0,99.1,40.4,99.4,96.0,61.15&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" /></p>
</td>
<td>
<p>from SNPedia,&nbsp;https://genomebiology.biomedcentral.com/articles/10.1186/gb-2012-13-9-248</p>

<p>&nbsp;</p>
</td>
</tr>
<tr>
<td>Skin and Hair&nbsp;color</td>
<td>OCA2</td>
<td><a href="https://www.snpedia.com/index.php/Rs1800414">rs1800414</a></td>
<td>
<p><span style="color:#daa520">(A;A)</span> <span style="color:#00ff00">(A;G) </span><span style="color:#0000ff">(G;G)</span></p>

<p><img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:100.0,16.8,16.8,100.0,0.0,16.8,17.4,99.0,0.0,0.0,0.0,0.0,52.4|0.0,46.7,56.6,0.0,0.0,46.7,51.4,1.0,0.0,0.0,0.0,0.0,28.914285714286|0.0,36.5,26.5,0.0,0.0,36.5,31.2,0.0,0.0,0.0,0.0,0.0,18.671428571429&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" /></p>
</td>
<td>from SNPedia,&nbsp;https://genomebiology.biomedcentral.com/articles/10.1186/gb-2012-13-9-248</td>
</tr>
<tr>
<td>Skin and Hair&nbsp;color</td>
<td>OCA2</td>
<td><a href="http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=74653330">rs74653330</a></td>
<td>G/A</td>
<td>from NCBI,&nbsp;https://genomebiology.biomedcentral.com/articles/10.1186/gb-2012-13-9-248</td>
</tr>
<tr>
<td>Skin and Hair&nbsp;color</td>
<td>DCT</td>
<td><a href="http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=1407995">rs1407995</a></td>
<td>C/T</td>
<td>from NCBI,&nbsp;https://genomebiology.biomedcentral.com/articles/10.1186/gb-2012-13-9-248</td>
</tr>
<tr>
<td>Skin and Hair&nbsp;color</td>
<td>KITLG</td>
<td><a href="https://www.snpedia.com/index.php/Rs12821256">rs12821256</a></td>
<td>
<p><span style="color:#daa520">(C;C)</span> <span style="color:#00ff00">(C;T)</span><span style="color:#0000ff"> (T;T)</span></p>

<p><img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:0.9,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.1|27.4,0.0,0.0,0.0,1.8,0.0,0.0,4.0,0.0,3.4,0.0,7.8,4.9333333333333|71.7,100.0,100.0,100.0,98.2,100.0,0.0,96.0,0.0,96.6,0.0,92.2,94.966666666667&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" /></p>
</td>
<td>from SNPedia,&nbsp;https://genomebiology.biomedcentral.com/articles/10.1186/gb-2012-13-9-248</td>
</tr>
<tr>
<td>Alcohol flush reaction</td>
<td>ADH1B</td>
<td><a href="https://www.snpedia.com/index.php/Rs1229984">rs1229984</a></td>
<td>
<p><span style="color:#daa520">(A;A)</span> <span style="color:#00ff00">(A;G)</span> <span style="color:#0000ff">(G;G)</span></p>

<p><img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:0.0,57.8,52.3,0.0,0.0,57.8,0.0,0.0,0.0,0.0,0.0,0.0,33.58|0.0,37.8,43.2,0.0,0.0,37.8,0.0,0.0,0.0,0.0,0.0,0.0,23.76|100.0,4.4,4.5,100.0,0.0,4.4,0.0,0.0,0.0,0.0,0.0,0.0,42.66&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" /></p>
</td>
<td>from SNPedia</td>
</tr>
<tr>
<td>
<p>Eye Color</p>
</td>
<td>TYRP1</td>
<td>[https://www.snpedia.com/index.php/Rs1408799 rs1408799]</td>
<td><img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:47.8,0.0,0.0,4.8,3.5,0.0,0.0,9.9,2.7,12.1,9.6,46.1,11.375|43.4,2.9,4.4,25.2,36.8,2.9,1.8,41.6,42.7,51.7,42.3,42.2,28.158333333333|8.8,97.1,95.6,70.1,59.6,97.1,98.2,48.5,54.5,36.2,48.1,11.8,60.466666666667&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" /></td>
<td>from SNPedia</td>
</tr>
<tr>
<td>Eye Color</td>
<td>OCA2</td>
<td>[https://www.snpedia.com/index.php/Rs1800414 rs1800414]</td>
<td><img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:100.0,16.8,16.8,100.0,0.0,16.8,17.4,99.0,0.0,0.0,0.0,0.0,52.4|0.0,46.7,56.6,0.0,0.0,46.7,51.4,1.0,0.0,0.0,0.0,0.0,28.914285714286|0.0,36.5,26.5,0.0,0.0,36.5,31.2,0.0,0.0,0.0,0.0,0.0,18.671428571429&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" /></td>
<td>from SNPedia</td>
</tr>
<tr>
<td>Eye Color</td>
<td>SLC27A2</td>
<td>[https://www.snpedia.com/index.php/Rs12913823 rs12913823]</td>
<td><img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:40.7,97.8,100.0,92.5,84.2,97.8,97.2,41.6,94.5,56.9,68.6,27.5,74.941666666667|47.8,2.2,0.0,6.8,14.0,2.2,2.8,51.5,5.5,34.5,29.5,51.0,20.65|11.5,0.0,0.0,0.7,1.8,0.0,0.0,6.9,0.0,8.6,1.9,21.6,4.4166666666667&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" /></td>
<td>from SNPedia</td>
</tr>
<tr>
<td>Eye Color</td>
<td>TYR</td>
<td>[https://www.snpedia.com/index.php/Rs1126809 rs1126809]</td>
<td><img src="http://chart.apis.google.com/chart?cht=bhs&amp;chd=t:4.6,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.92|33.8,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,6.76|61.5,100.0,100.0,100.0,0.0,100.0,0.0,0.0,0.0,0.0,0.0,0.0,92.3&amp;chs=275x228&amp;chbh=8,5&amp;chxl=0:|1:|AVG|TSI|MKK|MEX|LWK|GIH|CHD|CHB|ASW|YRI|JPT|HCB|CEU||&amp;chxt=x,y&amp;chco=CD853F,30FF30,0000FF,FF00FF&amp;chls=1,1,0|1,1,0|1,1,0|1,1,0" /></td>
<td>from SNPedia</td>
</tr>
<tr>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
</tr>
</tbody>
</table>
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