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Created page with "<p><span style="font-size:20px"><strong>Malay jellyfish genome</strong></span></p> <hr /> <p> </p> <p><span style="font-size:16px"><strong>1. Raw data and project folder i..."
<p><span style="font-size:20px"><strong>Malay jellyfish genome</strong></span></p>
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<p> </p>
<p><span style="font-size:16px"><strong>1. Raw data and project folder information</strong></span></p>
<ol style="list-style-type:upper-alpha">
<li><span style="font-size:16px">Project folder: Shark서버 /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03</span></li>
<li><span style="font-size:16px">Raw data information:</span>
<ol style="list-style-type:lower-roman">
<li><span style="font-size:16px">PacBio: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/Falcon_input</span></li>
<li><span style="font-size:16px">Short reads: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/Shortreads</span></li>
<li><span style="font-size:16px">RNA 4 stages and 3 tissue:</span>
<ol>
<li><span style="font-size:16px">4 stages (polyp, strobila, ephyra, medusa): /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/RNA</span></li>
<li><span style="font-size:16px">3 tissue (bell, oral_arm, tentacle): /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/RNA</span></li>
</ol>
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</ol>
</li>
</ol>
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<p> </p>
<p><span style="font-size:16px"><strong>2. Paper status: Not yet published (Analysis in progress)</strong></span></p>
<hr />
<p> </p>
<p><span style="font-size:16px"><strong>3. Analysis result</strong></span></p>
<ol style="list-style-type:upper-alpha">
<li><span style="font-size:16px">Assembly result: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/SMA_genome_HM2/1.Assembly/1.Assembled_genome/SMA_genome_HM2.genome.fa</span></li>
<li><span style="font-size:16px">Annotation result:</span>
<ol style="list-style-type:lower-roman">
<li><span style="font-size:16px">Gene set: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/5.GenePrediction_final</span></li>
<li><span style="font-size:16px">Repeat annotation: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/SMA_genome_HM2/3.rmlib_RepeatModeler/</span></li>
</ol>
</li>
</ol>
<hr />
<p> </p>
<p><span style="font-size:16px"><strong>4. Methods</strong></span></p>
<ol style="list-style-type:upper-alpha">
<li><span style="font-size:16px">Assembly<br />
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<br />
<img alt="" src="/ckfinder/userfiles/images/0_assembly_process.PNG" style="height:464px; width:620px" /></span><br />
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</li>
<li><span style="font-size:16px">Gene prediction<br />
<br />
<img alt="" src="/ckfinder/userfiles/images/1_gene_prediction.PNG" style="height:529px; width:692px" /></span><br />
</li>
<li><span style="font-size:16px">Repeat annotation</span><br />
<br />
<span style="font-size:16px"><img alt="" src="/ckfinder/userfiles/images/2_repeat_annotation.PNG" style="height:341px; width:424px" /></span></li>
</ol>
<p> </p>
<p> </p>
<p> </p>
<p> </p>
<p> </p>
<p> </p>
<hr />
<p> </p>
<p><span style="font-size:16px"><strong>1. Raw data and project folder information</strong></span></p>
<ol style="list-style-type:upper-alpha">
<li><span style="font-size:16px">Project folder: Shark서버 /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03</span></li>
<li><span style="font-size:16px">Raw data information:</span>
<ol style="list-style-type:lower-roman">
<li><span style="font-size:16px">PacBio: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/Falcon_input</span></li>
<li><span style="font-size:16px">Short reads: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/Shortreads</span></li>
<li><span style="font-size:16px">RNA 4 stages and 3 tissue:</span>
<ol>
<li><span style="font-size:16px">4 stages (polyp, strobila, ephyra, medusa): /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/RNA</span></li>
<li><span style="font-size:16px">3 tissue (bell, oral_arm, tentacle): /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/0.Rawdata/RNA</span></li>
</ol>
</li>
</ol>
</li>
</ol>
<hr />
<p> </p>
<p><span style="font-size:16px"><strong>2. Paper status: Not yet published (Analysis in progress)</strong></span></p>
<hr />
<p> </p>
<p><span style="font-size:16px"><strong>3. Analysis result</strong></span></p>
<ol style="list-style-type:upper-alpha">
<li><span style="font-size:16px">Assembly result: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/SMA_genome_HM2/1.Assembly/1.Assembled_genome/SMA_genome_HM2.genome.fa</span></li>
<li><span style="font-size:16px">Annotation result:</span>
<ol style="list-style-type:lower-roman">
<li><span style="font-size:16px">Gene set: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/5.GenePrediction_final</span></li>
<li><span style="font-size:16px">Repeat annotation: /BiO/Research/Project1/TGI-MalayJellyfish-Genome-2018-03/SMA_genome_HM2/3.rmlib_RepeatModeler/</span></li>
</ol>
</li>
</ol>
<hr />
<p> </p>
<p><span style="font-size:16px"><strong>4. Methods</strong></span></p>
<ol style="list-style-type:upper-alpha">
<li><span style="font-size:16px">Assembly<br />
<br />
<br />
<img alt="" src="/ckfinder/userfiles/images/0_assembly_process.PNG" style="height:464px; width:620px" /></span><br />
<br />
</li>
<li><span style="font-size:16px">Gene prediction<br />
<br />
<img alt="" src="/ckfinder/userfiles/images/1_gene_prediction.PNG" style="height:529px; width:692px" /></span><br />
</li>
<li><span style="font-size:16px">Repeat annotation</span><br />
<br />
<span style="font-size:16px"><img alt="" src="/ckfinder/userfiles/images/2_repeat_annotation.PNG" style="height:341px; width:424px" /></span></li>
</ol>
<p> </p>
<p> </p>
<p> </p>
<p> </p>
<p> </p>
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