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,Created page with " '''2020''' *[https://www.ncbi.nlm.nih.gov/pubmed/32076829 Decoding a highly mixed Kazakh genome. Seidualy, M., Blazyte, A., Jeon, S., Bhak, Y., Jeon Y., Kim, J., . . . Bha..."
'''2020'''
*[https://www.ncbi.nlm.nih.gov/pubmed/32076829 Decoding a highly mixed Kazakh genome. Seidualy, M., Blazyte, A., Jeon, S., Bhak, Y., Jeon Y., Kim, J., . . . Bhak, J.(2020) Hum Genet.]
*[https://www.ncbi.nlm.nih.gov/pubmed/31940721 Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity. Lee, H., Kim, J., Weber, J. A., Chung, O., Cho, Y. S., Jho, S., . . . Bhak, J. (2020). Mol Cells.]
'''2019'''
*[https://www.ncbi.nlm.nih.gov/pubmed/30811824 Brca2 abrogation engages with the alternative lengthening of telomeres via break-induced replication. Kwon, M. S., Lee, J. J., Min, J., Hwang, K., Park, S. G., Kim, E. H., . . . Lee, H. (2019). FEBS J, 286(10), 1841-1858.]
*[https://www.ncbi.nlm.nih.gov/pubmed/31794015 Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information. Kim, H. S., Jeon, S., Kim, C., Kim, Y. K., Cho, Y. S., Kim, J., . . . Bhak, J. (2019). Gigascience, 8(12).]
*[https://www.ncbi.nlm.nih.gov/pubmed/31810925 Combinatory Analysis of Cell-free and Circulating Tumor Cell DNAs Provides More Variants for Cancer Treatment. Lee, S. Y., Chae, D. K., An, J., Yoo, S., Jung, S., Chae, C. H., . . . Cho, D. H. (2019). Anticancer Res, 39(12), 6595-6602.]
*[https://www.ncbi.nlm.nih.gov/pubmed/30775972 Comparison of exercise electrocardiography and magnetocardiography for detection of coronary artery disease using ST-segment fluctuation score. Shin, E. S., Chung, J. H., Park, S. G., Saleh, A., Lam, Y. Y., Bhak, J., . . . Brachmann, J. (2019). Clin Hemorheol Microcirc, 73(2), 283-291.]
*[https://www.ncbi.nlm.nih.gov/pubmed/31624227 Depression and suicide risk prediction models using blood-derived multi-omics data. Bhak, Y., Jeong, H. O., Cho, Y. S., Jeon, S., Cho, J., Gim, J. A., . . . Lee, S. (2019). Transl Psychiatry, 9(1), 262.]
*[https://www.ncbi.nlm.nih.gov/pubmed/30825304 The Draft Genome of an Octocoral, Dendronephthya gigantea. Jeon, Y., Park, S. G., Lee, N., Weber, J. A., Kim, H. S., Hwang, S. J., . . . Yum, S. (2019). Genome Biol Evol, 11(3), 949-953.]
*[https://www.ncbi.nlm.nih.gov/pubmed/30811993 The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax. Kong, H. G., Kim, H. H., Chung, J. H., Jun, J., Lee, S., Kim, H. M., . . . Ryu, C. M. (2019). Cell Rep, 26(9), 2451-2464 e2455.]
*[https://www.ncbi.nlm.nih.gov/pubmed/30925871 The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation. Kim, H. M., Weber, J. A., Lee, N., Park, S. G., Cho, Y. S., Bhak, Y., . . . Yum, S. (2019). BMC Biol, 17(1), 28.]
*[https://www.ncbi.nlm.nih.gov/pubmed/30535859 Investigation of Hanwoo-specific structural variations using whole-genome sequencing data. Park, J., Shin, W., Mun, S., Oh, M. H., Lim, D., Oh, D. Y., . . . Han, K. (2019). Genes Genomics, 41(2), 233-240.]
*[https://www.ncbi.nlm.nih.gov/pubmed/31464627 Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles. Cho, Y. S., Jun, J. H., Kim, J. A., Kim, H. M., Chung, O., Kang, S. G., . . . Bhak, J. (2019). Genome Biology, 20(1), 181.]
*[https://www.ncbi.nlm.nih.gov/pubmed/29432975 Sequencing and analysis of the whole genome of Indian Gujarati male. Almal, S., Jeon, S., Agarwal, M., Patel, S., Patel, S., Bhak, Y., . . . Padh, H. (2019). Genomics, 111(2), 196-204.]
'''2018'''
*[https://www.ncbi.nlm.nih.gov/pubmed/29644394 Genomic analysis reveals secondary glioblastoma after radiotherapy in a subset of recurrent medulloblastomas. Phi, J. H., Park, A. K., Lee, S., Choi, S. A., Baek, I. P., Kim, P., . . . Kim, S. K. (2018). Acta Neuropathol, 135(6), 939-953.]
*[https://www.ncbi.nlm.nih.gov/pubmed/29383489 Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia. Yew, C. W., Lu, D., Deng, L., Wong, L. P., Ong, R. T., Lu, Y., . . . Hoh, B. P. (2018). Hum Genet, 137(2), 161-173.]
*[https://www.ncbi.nlm.nih.gov/pubmed/30475813 Grading system for periodontitis by analyzing levels of periodontal pathogens in saliva. Kim, E. H., Joo, J. Y., Lee, Y. J., Koh, J. K., Choi, J. H., Shin, Y., . . . Lee, J. Y. (2018). PLoS One, 13(11), e0200900.]
*[https://www.ncbi.nlm.nih.gov/pubmed/29618732 KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses. Kim, J., Weber, J. A., Jho, S., Jang, J., Jun, J., Cho, Y. S., . . . Bhak, J. (2018). Sci Rep, 8(1), 5677.]
*[https://www.ncbi.nlm.nih.gov/pubmed/30320564 Magnetocardiography scoring system to predict the presence of obstructive coronary artery disease. Shin, E. S., Park, S. G., Saleh, A., Lam, Y. Y., Bhak, J., Jung, F., . . . Brachmann, J. (2018). Clin Hemorheol Microcirc, 70(4), 365-373.]
*[https://www.ncbi.nlm.nih.gov/pubmed/29775755 Whole genome sequencing and bioinformatics analysis of two Egyptian genomes. ElHefnawi, M., Jeon, S., Bhak, Y., ElFiky, A., Horaiz, A., Jun, J., . . . Bhak, J. (2018). Gene, 668, 129-134.]
'''2017'''
*[https://www.ncbi.nlm.nih.gov/pubmed/28074842 Analysis of the FGF gene family provides insights into aquatic adaptation in cetaceans. Nam, K., Lee, K. W., Chung, O., Yim, H. S., Cha, S. S., Lee, S. W., . . . Jeong, J. Y. (2017). Sci Rep, 7, 40233.]
*[https://www.ncbi.nlm.nih.gov/pubmed/28991236 Corrigendum: An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Cho, Y. S., Kim, H., Kim, H. M., Jho, S., Jun, J., Lee, Y. J., . . . Bhak, J. (2017). Nat Commun, 8, 16168.]
*[https://www.ncbi.nlm.nih.gov/pubmed/28164156 Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago. Siska, V., Jones, E. R., Jeon, S., Bhak, Y., Kim, H. M., Cho, Y. S., . . . Manica, A. (2017). Sci Adv, 3(2), e1601877.]
*[https://www.ncbi.nlm.nih.gov/pubmed/28678835 Myotis rufoniger genome sequence and analyses: M. rufoniger's genomic feature and the decreasing effective population size of Myotis bats. Bhak, Y., Jeon, Y., Jeon, S., Chung, O., Jho, S., Jun, J., . . . Bhak, J. (2017). PLoS One, 12(7), e0180418.]
*[https://www.ncbi.nlm.nih.gov/pubmed/28042784 Perspectives provided by leopard and other cat genomes: how diet determined the evolutionary history of carnivores, omnivores, and herbivores. Kim, S., Cho, Y. S., Bhak, J., O'Brian, S. J., & Yeo, J. H. (2017). BMB Rep, 50(1), 3-4.]
'''2016'''
*[https://www.ncbi.nlm.nih.gov/pubmed/27716407 An adaptive detection method for fetal chromosomal aneuploidy using cell-free DNA from 447 Korean women. Kim, S., Jung, H., Han, S. H., Lee, S., Kwon, J., Kim, M. G., . . . Bhak, J. (2016). Bmc Medical Genomics, 9(1), 61.]
*[https://www.ncbi.nlm.nih.gov/pubmed/27802837 Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly. Kim, S., Cho, Y. S., Kim, H. M., Chung, O., Kim, H., Jho, S., . . . Yeo, J. H. (2016). Genome Biology, 17(1), 211.]
*[https://www.ncbi.nlm.nih.gov/pubmed/27129388 Comparison of two high-throughput semiconductor chip sequencing platforms in noninvasive prenatal testing for Down syndrome in early pregnancy. Kim, S., Jung, H., Han, S. H., Lee, S., Kwon, J., Kim, M. G., . . . Bhak, J. (2016). Bmc Medical Genomics, 9(1), 22.]
*[https://www.ncbi.nlm.nih.gov/pubmed/27882922 An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Cho, Y. S., Kim, H., Kim, H. M., Jho, S., Jun, J., Lee, Y. J., . . . Bhak, J. (2016). Nat Commun, 7, 13637.]
*[https://www.ncbi.nlm.nih.gov/pubmed/27502179 The genetics of an early Neolithic pastoralist from the Zagros, Iran. Gallego-Llorente, M., Connell, S., Jones, E. R., Merrett, D. C., Jeon, Y., Eriksson, A., . . . Pinhasi, R. (2016). Sci Rep, 6, 31326.]
*[https://www.ncbi.nlm.nih.gov/pubmed/28004835 Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle. Aranda, M., Li, Y., Liew, Y. J., Baumgarten, S., Simakov, O., Wilson, M. C., . . . Voolstra, C. R. (2016). Sci Rep, 6, 39734.]
*[https://www.ncbi.nlm.nih.gov/pubmed/27153548 RNA-Seq analysis reveals new evidence for inflammation-related changes in aged kidney. Park, D., Kim, B. C., Kim, C. H., Choi, Y. J., Jeong, H. O., Kim, M. E., . . . Chung, H. Y. (2016). Oncotarget, 7(21), 30037-30048.]
*[https://www.ncbi.nlm.nih.gov/pubmed/27561685 Short-term calorie restriction ameliorates genomewide, age-related alterations in DNA methylation. Kim, C. H., Lee, E. K., Choi, Y. J., An, H. J., Jeong, H. O., Park, D., . . . Chung, H. Y. (2016). Aging Cell, 15(6), 1074-1081.]
'''2015'''
*[https://www.ncbi.nlm.nih.gov/pubmed/26449472 Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent. Gallego Llorente, M., Jones, E. R., Eriksson, A., Siska, V., Arthur, K. W., Arthur, J. W., . . . Manica, A. (2015). Science, 350(6262), 820-822.]
*[https://link.springer.com/article/10.1007/s13258-015-0353-7 Characterization of cetacean Numt and its application into cetacean phylogeny. Ko, Y. J., Yang, E. C., Lee, J. H., Lee, K. W., Jeong, J. Y., Park, K., . . . Yim, H. S. (2015). Genes & Genomics, 37(12), 1061-1071.]
*[https://www.ncbi.nlm.nih.gov/pubmed/26486310 The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures. Chung, O., Jin, S., Cho, Y. S., Lim, J., Kim, H., Jho, S., . . . Paek, W. K. (2015). Genome Biology, 16, 215.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25666347 Genome-wide analysis of DNA methylation before-and after exercise in the thoroughbred horse with MeDIP-Seq. Gim, J. A., Hong, C. P., Kim, D. S., Moon, J. W., Choi, Y., Eo, J., . . . Kim, H. S. (2015). Mol Cells, 38(3), 210-220.]
*[https://www.ncbi.nlm.nih.gov/pubmed/26653294 Genomic legacy of the African cheetah, Acinonyx jubatus. Dobrynin, P., Liu, S., Tamazian, G., Xiong, Z., Yurchenko, A. A., Krasheninnikova, K., . . . O'Brien, S. J. (2015). Genome Biology, 16, 277.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25637569 HEpD: A database describing epigenetic differences between Thoroughbred and Jeju horses. Gim, J. A., Lee, S., Kim, D. S., Jeong, K. S., Hong, C. P., Bae, J. H., . . . Kim, H. S. (2015a). Gene, 560(1), 83-88.]
*[https://link.springer.com/article/10.1007/s13258-014-0251-4 HExDB: a database for epigenetic changes occurring after horse exercise. Gim, J. A., Lee, S., Kim, D. S., Jeong, K. S., Hong, C. P., Bae, J. H., . . . Kim, H. S. (2015b). Genes & Genomics, 37(3), 287-294.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25565328 Insights into the Evolution of Longevity from the Bowhead Whale Genome. Keane, M., Semeiks, J., Webb, A. E., Li, Y. I., Quesada, V., Craig, T., . . . de Magalhaes, J. P. (2015). Cell reports, 10(1), 112-122.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25983541 Profiling age-related epigenetic markers of stomach adenocarcinoma in young and old subjects. Kim, B. C., Jeong, H. O., Park, D., Kim, C. H., Lee, E. K., Kim, D. H., . . . Chung, H. Y. (2015). Cancer Inform, 14, 47-54.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25965825 SLC15A2 genomic variation is associated with the extraordinary response of sorafenib treatment: whole-genome analysis in patients with hepatocellular carcinoma. Lee, Y. S., Kim, B. H., Kim, B. C., Shin, A., Kim, J. S., Hong, S. H., . . . Park, J. W. (2015). Oncotarget, 6(18), 16449-16460.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25887915 Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan. Ilyas, M., Kim, J. S., Cooper, J., Shin, Y. A., Kim, H. M., Cho, Y. S., . . . Bhak, J. (2015). BMC genomics, 16, 172.]
'''2014'''
*[https://www.ncbi.nlm.nih.gov/pubmed/25329639 The feasibility study of non-invasive fetal trisomy 18 and 21 detection with semiconductor sequencing platform. Jeon, Y. J., Zhou, Y., Li, Y., Guo, Q., Chen, J., Quan, S., . . . Bhak, J. (2014). PLoS One, 9(10), e110240.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25027854 Genome-wide analysis of DNA methylation patterns in horse. Lee, J. R., Hong, C. P., Moon, J. W., Jung, Y. D., Kim, D. S., Kim, T. H., . . . Kim, H. S. (2014). BMC genomics, 15, 598.]
*[https://www.ncbi.nlm.nih.gov/pubmed/24690483 Genomic profile analysis of diffuse-type gastric cancers. Lee, Y. S., Cho, Y. S., Lee, G. K., Lee, S., Kim, Y. W., Jho, S., . . . Lee, J. S. (2014). Genome Biology, 15(4).]
*[https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093662 Identification and Characterization of MicroRNAs in Normal Equine Tissues by Next Generation Sequencing. Kim, M. C., Lee, S. W., Ryu, D. Y., Cui, F. J., Bhak, J., & Kim, Y. (2014). PLoS One, 9(4).]
*[https://www.ncbi.nlm.nih.gov/pubmed/24270359 Minke whale genome and aquatic adaptation in cetaceans. Yim, H. S., Cho, Y. S., Guang, X., Kang, S. G., Jeong, J. Y., Cha, S. S., . . . Lee, J. H. (2014). Nature Genetics, 46(1), 88-92.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25031567 New lung cancer panel for high-throughput targeted resequencing. Kim, E. H., Lee, S., Park, J., Lee, K., Bhak, J., & Kim, B. C. (2014). Genomics Inform, 12(2), 50-57.]
*[https://www.ncbi.nlm.nih.gov/pubmed/24276243 PPP1R1B-STARD3 chimeric fusion transcript in human gastric cancer promotes tumorigenesis through activation of PI3K/AKT signaling. Yun, S. M., Yoon, K., Lee, S., Kim, E., Kong, S. H., Choe, J., . . . Kim, S. J. (2014). Oncogene, 33(46), 5341-5347.]
*[https://www.ncbi.nlm.nih.gov/pubmed/24709692 Whole-genome analysis of a patient with early-stage small-cell lung cancer. Han, J. Y., Lee, Y. S., Kim, B. C., Lee, G. K., Lee, S., Kim, E. H., . . . Bhak, J. (2014). Pharmacogenomics J, 14(6), 503-508.]
*[https://www.ncbi.nlm.nih.gov/pubmed/25521865 Whole genome sequence and analysis of the Marwari horse breed and its genetic origin. Jun, J., Cho, Y. S., Hu, H., Kim, H. M., Jho, S., Gadhvi, P., . . . Bhak, J. (2014). BMC genomics, 15.]
'''2013'''
*[https://www.ncbi.nlm.nih.gov/pubmed/23737375 Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers. Yoon, K., Lee, S., Han, T. S., Moon, S. Y., Yun, S. M., Kong, S. H., . . . Kim, S. J. (2013). Genome Research, 23(7), 1109-1117.]
*[https://www.ncbi.nlm.nih.gov/pubmed/23707431 The genetic basis of white tigers. Xu, X., Dong, G. X., Hu, X. S., Miao, L., Zhang, X. L., Zhang, D. L., . . . Luo, S. J. (2013). Current Biology, 23(11), 1031-1035.]
*[https://www.ncbi.nlm.nih.gov/pubmed/23742982 iAnn: an event sharing platform for the life sciences. Jimenez, R. C., Albar, J. P., Bhak, J., Blatter, M. C., Blicher, T., Brazas, M. D., . . . Corpas, M. (2013). Bioinformatics, 29(15), 1919-1921.]
*[https://www.ncbi.nlm.nih.gov/pubmed/23580538 Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse. Kim, H., Lee, T., Park, W., Lee, J. W., Kim, J., Lee, B. Y., . . . Kim, H. (2013). DNA Res, 20(3), 287-298.]
*[https://www.ncbi.nlm.nih.gov/pubmed/24045858 The tiger genome and comparative analysis with lion and snow leopard genomes. Cho, Y. S., Hu, L., Hou, H., Lee, H., Xu, J., Kwon, S., . . . Bhak, J. (2013). Nat Commun, 4, 2433.]
*[https://www.nature.com/articles/srep02998 Whole genome comparison of donor and cloned dogs. Kim, H. M., Cho, Y. S., Kim, H., Jho, S., Son, B., Choi, J. Y., . . . Jang, G. (2013). Scientific reports, 3.]
'''2012'''
*[https://www.ncbi.nlm.nih.gov/pubmed/22580955 De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis. Hyun, T. K., Rim, Y., Jang, H. J., Kim, C. H., Park, J., Kumar, R., . . . Kim, J. Y. (2012). Plant Mol Biol, 79(4-5), 413-427.]
*[https://www.pnas.org/content/109/12/4574.short Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Xu, S. H., Pugach, I., Stoneking, M., Kayser, M., Jin, L., & Consortium, H. P.-A. S. (2012). Proceedings of the National Academy of Sciences of the United States of America, 109(12), 4574-4579.]
*[https://www.ncbi.nlm.nih.gov/pubmed/24627758 Low budget analysis of Direct-To-Consumer genomic testing familial data. Glusman, G., Cariaso, M., Jimenez, R., Swan, D., Greshake, B., Bhak, J., . . . Corpas, M. (2012). F1000Res, 1, 3.]
*[https://www.ncbi.nlm.nih.gov/pubmed/22139927 MetaBase--the wiki-database of biological databases. Bolser, D. M., Chibon, P. Y., Palopoli, N., Gong, S., Jacob, D., Del Angel, V. D., . . . Bhak, J. (2012). Nucleic Acids Res, 40(Database issue), D1250-1254.]
*[https://www.ncbi.nlm.nih.gov/pubmed/22797899 A public resource facilitating clinical use of genomes. Ball, M. P., Thakuria, J. V., Zaranek, A. W., Clegg, T., Rosenbaum, A. M., Wu, X. D., . . . Church, G. M. (2012). Proceedings of the National Academy of Sciences of the United States of America, 109(30), 11920-11927.]
*[https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-13-473 Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq. Park, K. D., Park, J., Ko, J., Kim, B. C., Kim, H. S., Ahn, K., . . . Cho, B. W. (2012). BMC genomics, 13.]
'''2011'''
*[https://www.ncbi.nlm.nih.gov/pubmed/21696235 BetaDock: shape-priority docking method based on beta-complex. Kim, D. S., Kim, C. M., Won, C. I., Kim, J. K., Ryu, J., Cho, Y., . . . Bhak, J. (2011). J Biomol Struct Dyn, 29(1), 219-242.]
*[https://www.ncbi.nlm.nih.gov/pubmed/21765942 Gene expression pattern in transmitochondrial cytoplasmic hybrid cells harboring type 2 diabetes-associated mitochondrial DNA haplogroups. Hwang, S., Kwak, S. H., Bhak, J., Kang, H. S., Lee, Y. R., Koo, B. K., . . . Cho, Y. M. (2011). PLoS One, 6(7), e22116.]
*[https://www.ncbi.nlm.nih.gov/pubmed/22242128 Identification of close relatives in the HUGO Pan-Asian SNP database. Yang, X., Xu, S., Consortium, H. P.-A. S., & Indian Genome Variation, C. (2011). PLoS One, 6(12), e29502.]
*[https://www.ncbi.nlm.nih.gov/pubmed/22369201 Liverome: a curated database of liver cancer-related gene signatures with self-contained context information. Lee, L., Wang, K., Li, G., Xie, Z., Wang, Y., Xu, J., . . . Hwang, S. (2011). BMC genomics, 12 Suppl 3, S3.]
*[https://www.ncbi.nlm.nih.gov/pubmed/21334307 Mutational hotspots in the mitochondrial genome of lung cancer. Choi, S. J., Kim, S. H., Kang, H. Y., Lee, J., Bhak, J. H., Sohn, I., . . . Kim, J. (2011). Biochem Biophys Res Commun, 407(1), 23-27.]
*[https://www.ncbi.nlm.nih.gov/pubmed/21731755 PanSNPdb: the Pan-Asian SNP genotyping database. Ngamphiw, C., Assawamakin, A., Xu, S., Shaw, P. J., Yang, J. O., Ghang, H., . . . Consortium, H. P.-A. S. (2011). PLoS One, 6(6), e21451.]
*[https://www.ncbi.nlm.nih.gov/pubmed/21483678 Population genetic structure of peninsular Malaysia Malay sub-ethnic groups. Hatin, W. I., Nur-Shafawati, A. R., Zahri, M. K., Xu, S., Jin, L., Tan, S. G., . . . Consortium, H. P.-A. S. (2011). PLoS One, 6(4), e18312.]
'''2010'''
*[https://www.ncbi.nlm.nih.gov/pubmed/19418260 Alpha-glucosidase folding during urea denaturation: enzyme kinetics and computational prediction. Wu, X. Q., Wang, J., Lu, Z. R., Tang, H. M., Park, D., Oh, S. H., . . . Zou, F. (2010). Appl Biochem Biotechnol, 160(5), 1341-1355.]
*[https://www.ncbi.nlm.nih.gov/pubmed/20536287 Differential evolutionary rates of neuronal transcriptome in Aplysia kurodai and Aplysia californica as a tool for gene mining. Choi, S. L., Lee, Y. S., Rim, Y. S., Kim, T. H., Moroz, L. L., Kandel, E. R., . . . Kaang, B. K. (2010). J Neurogenet, 24(2), 75-82.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19701810 The effect of trifluoroethanol on tyrosinase activity and conformation: inhibition kinetics and computational simulations. Lu, Z. R., Shi, L., Wang, J., Park, D., Bhak, J., Yang, J. M., . . . Zou, F. (2010). Appl Biochem Biotechnol, 160(7), 1896-1908.]
*[https://www.ncbi.nlm.nih.gov/pubmed/20686617 Gene flow between the Korean peninsula and its neighboring countries. Jung, J., Kang, H., Cho, Y. S., Oh, J. H., Ryu, M. H., Chung, H. W., . . . Kim, H. L. (2010). PLoS One, 5(7), e11855.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19277488 Kinetics of Zn(2+)-induced brain type creatine kinase unfolding and aggregation. Mu, H., Lu, Z. R., Park, D., Kim, B. C., Bhak, J., Zou, F., . . . Zhou, H. M. (2010). Appl Biochem Biotechnol, 160(5), 1309-1320.]
*[https://www.ncbi.nlm.nih.gov/pubmed/20624717 PDBWiki: added value through community annotation of the Protein Data Bank. Stehr, H., Duarte, J. M., Lappe, M., Bhak, J., & Bolser, D. M. (2010). Database (Oxford), 2010, baq009.]
*[https://www.ncbi.nlm.nih.gov/pubmed/20645659 A proposal for the revision of molecular boundary typology. Kim, D. S., Won, C. I., & Bhak, J. (2010). J Biomol Struct Dyn, 28(2), 277-288.]
*[https://www.ncbi.nlm.nih.gov/pubmed/20875130 Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection. Florez, A. F., Park, D., Bhak, J., Kim, B. C., Kuchinsky, A., Morris, J. H., . . . Muskus, C. (2010). BMC Bioinformatics, 11, 484.]
*[https://www.ncbi.nlm.nih.gov/pubmed/20129805 Sphericity of a protein via the beta-complex. Kim, D. S., Kim, J. K., Won, C. I., Kim, C. M., Park, J. Y., & Bhak, J. (2010). J Mol Graph Model, 28(7), 636-649.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19082922 Structural analysis and inhibitory kinetics of brain type creatine kinase by sodium dodecyl sulfate. Lu, Z. R., Oh, S. H., Zhou, S. S., Zou, H. C., Park, D., Park, S. J., . . . Zou, F. (2010). Appl Biochem Biotechnol, 160(3), 831-842.]
*[https://www.ncbi.nlm.nih.gov/pubmed/20004400 Systematic cyanobacterial membrane proteome analysis by combining acid hydrolysis and digestive enzymes with nano-liquid chromatography-Fourier transform mass spectrometry. Kwon, J., Oh, J., Park, C., Cho, K., Kim, S. I., Kim, S., . . . Choi, J. S. (2010). J Chromatogr A, 1217(3), 285-293.]
*[https://www.ncbi.nlm.nih.gov/pubmed/21131573 Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Kim, M. Y., Lee, S., Van, K., Kim, T. H., Jeong, S. C., Choi, I. Y., . . . Lee, S. H. (2010). Proc Natl Acad Sci U S A, 107(51), 22032-22037.]
'''2009'''
*[https://www.ncbi.nlm.nih.gov/pubmed/19958506 BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources. Lim, J., Kim, S. Y., Kim, S., Eo, H. S., Kim, C. B., Paek, W. K., . . . Bhak, J. (2009). BMC genomics, 10 Suppl 3, S8.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19958500 COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System. Jho, S., Kim, B. C., Ghang, H., Kim, J. H., Park, D., Kim, H. M., . . . Bhak, J. (2009). BMC genomics, 10 Suppl 3, S35.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19443183 DNA microarray analyses and interactomic predictions for atopic dermatitis. Lu, Z. R., Kim, W. S., Cho, I. H., Park, D., Bhak, J., Shi, L., . . . Zou, F. (2009). J Dermatol Sci, 55(2), 123-125.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18824329 Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses. Lu, Z. R., Park, T. H., Lee, E. S., Kim, K. J., Park, D., Kim, B. C., . . . Yang, J. M. (2009). J Dermatol Sci, 53(2), 146-150.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19061912 The effects of acrylamide on brain creatine kinase: inhibition kinetics and computational docking simulation. Lu, Z. R., Zou, H. C., Park, S. J., Park, D., Shi, L., Oh, S. H., . . . Zou, F. (2009). Int J Biol Macromol, 44(2), 128-132.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19470904 The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group. Ahn, S. M., Kim, T. H., Lee, S., Kim, D., Ghang, H., Kim, D. S., . . . Kim, S. J. (2009). Genome Res, 19(9), 1622-1629.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19958513 Gevab: a prototype genome variation analysis browsing server. Kim, W. Y., Kim, S. Y., Kim, T. H., Ahn, S. M., Byun, H. N., Kim, D., . . . Bhak, J. (2009). BMC Bioinformatics, 10 Suppl 15, S3.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19958510 The Korean Bird Information System (KBIS) through open and public participation. Paik, I. H., Lim, J., Chun, B. S., Jin, S. D., Yu, J. P., Lee, J. W., . . . Paek, W. K. (2009). BMC Bioinformatics, 10 Suppl 15, S11.]
*[https://www.ncbi.nlm.nih.gov/pubmed/20007900 Mapping human genetic diversity in Asia. Consortium, H. P.-A. S., Abdulla, M. A., Ahmed, I., Assawamakin, A., Bhak, J., Brahmachari, S. K., . . . Indian Genome Variation, C. (2009). Science, 326(5959), 1541-1545.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19958484 MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis. Reja, R., Venkatakrishnan, A. J., Lee, J., Kim, B. C., Ryu, J. W., Gong, S., . . . Park, D. (2009). BMC genomics, 10 Suppl 3, S20.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19958475 MitoVariome: a variome database of human mitochondrial DNA. Lee, Y. S., Kim, W. Y., Ji, M., Kim, J. H., & Bhak, J. (2009). BMC genomics, 10 Suppl 3, S12.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19958497 PDbase: a database of Parkinson's disease-related genes and genetic variation using substantia nigra ESTs. Yang, J. O., Kim, W. Y., Jeong, S. Y., Oh, J. H., Jho, S., Bhak, J., & Kim, N. S. (2009). BMC genomics, 10 Suppl 3, S32.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19306394 Planning the human variome project: the Spain report. Kaput, J., Cotton, R. G., Hardman, L., Watson, M., Al Aqeel, A. I., Al-Aama, J. Y., . . . Contributors to the Human Variome Project Planning, M. (2009). Human Mutation, 30(4), 496-510.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19157793 Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses. Lu, Z. R., Park, D., Lee, K. A., Ryu, J. W., Bhak, J., Shi, L., . . . Yang, J. M. (2009). J Dermatol Sci, 54(2), 126-129.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19958481 PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440. Park, S. J., Choi, J. S., Kim, B. C., Jho, S. W., Ryu, J. W., Park, D., . . . Kim, S. I. (2009). BMC genomics, 10 Suppl 3, S18.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19760752 ssSNPTarget: genome-wide splice-site Single Nucleotide Polymorphism database. Yang, J. O., Kim, W. Y., & Bhak, J. (2009). Human Mutation, 30(12), E1010-1020.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19721878 Transcriptome and protein domain analyses in Aplysia nervous system with evolutionary implications. Lee, Y. S., Kim, T. H., Choi, S. L., Lee, S., Bhak, J., & Kaang, B. K. (2009). Commun Integr Biol, 2(4), 321-323.]
'''2008'''
*[https://www.ncbi.nlm.nih.gov/pubmed/18037613 Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries. Sangket, U., Phongdara, A., Chotigeat, W., Nathan, D., Kim, W. Y., Bhak, J., . . . Tan, T. W. (2008). Bioinformatics, 24(2), 299-301.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18604500 Cyanobacterial hybrid kinase Sll0043 regulates phototaxis by suppressing pilin and twitching motility protein. Shin, B. J., Oh, J., Kang, S., Chung, Y. H., Park, Y. M., Kim, Y. H., . . . Choi, J. S. (2008). J Microbiol, 46(3), 300-308.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18808205 The effect of histidine residue modification on tyrosinase activity and conformation: inhibition kinetics and computational prediction. Guo, L., Lu, Z. R., Park, D., Oh, S. H., Shi, L., Park, S. J., . . . Zou, F. (2008). J Biomol Struct Dyn, 26(3), 395-402.]
*[https://link.springer.com/article/10.1007/s12257-007-0183-9 Identification of gene-related Korean patents and construction of a database server for Korean patent sequences. Lee, B., Kim, S.-K., Kim, T., Kim, S. S., Ryu, G. C., & Bhak, J. (2008). Biotechnology and Bioprocess Engineering, 13(2), 248.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19091018 An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases. Yang, J. O., Hwang, S., Oh, J., Bhak, J., & Sohn, T. K. (2008). BMC Bioinformatics, 9 Suppl 12, S19.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19091024 An integrated Korean biodiversity and genetic information retrieval system. Lim, J., Bhak, J., Oh, H. M., Kim, C. B., Park, Y. H., & Paek, W. K. (2008). BMC Bioinformatics, 9 Suppl 12, S24.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18448467 MassNet: a functional annotation service for protein mass spectrometry data. Park, D., Kim, B. C., Cho, S. W., Park, S. J., Choi, J. S., Kim, S. I., . . . Lee, S. (2008). Nucleic Acids Res, 36(Web Server issue), W491-495.]
*[http://www.koreascience.or.kr/article/JAKO200806135606418.page Personal genomics, bioinformatics, and variomics. Bhak, J., Ghang, H., Reja, R., & Kim, S.-S. (2008). Genomics & Informatics, 6(4), 161-165.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18023220 Pocket extraction on proteins via the Voronoi diagram of spheres. Kim, D., Cho, C. H., Cho, Y., Ryu, J., Bhak, J., & Kim, D. S. (2008). J Mol Graph Model, 26(7), 1104-1112.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18215330 Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service. Kim, J. G., Park, D., Kim, B. C., Cho, S. W., Kim, Y. T., Park, Y. J., . . . Bhak, J. (2008). BMC Bioinformatics, 9, 41.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18948079 Prediction and evaluation of protein-protein interaction in keratinocyte differentiation. Yoon, H. K., Sohn, K. C., Lee, J. S., Kim, Y. J., Bhak, J., Yang, J. M., . . . Lee, J. H. (2008). Biochem Biophys Res Commun, 377(2), 662-667.]
*[https://www.ncbi.nlm.nih.gov/pubmed/21136834 Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics. Park, Y. D., Park, D., Bhak, J., & Yang, J. M. (2008). Proteomics Clin Appl, 2(3), 290-300.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18315851 SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions. Kim, B. C., Kim, W. Y., Park, D., Chung, W. H., Shin, K. S., & Bhak, J. (2008). BMC Bioinformatics, 9 Suppl 1, S2.]
*[http://www.koreascience.or.kr/article/JAKO200831235453829.page Structural Bioinformatics Analysis of Disease-related Mutations. Park, S.-J., Oh, S.-H., Park, D.-U., & Bhak, J. (2008). Genomics & Informatics, 6(3), 142-146.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18315852 SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803. Kim, W. Y., Kang, S., Kim, B. C., Oh, J., Cho, S., Bhak, J., & Choi, J. S. (2008). BMC Bioinformatics, 9 Suppl 1, S20.]
*[https://www.ncbi.nlm.nih.gov/pubmed/19017802 Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai. Lee, Y. S., Choi, S. L., Kim, T. H., Lee, J. A., Kim, H. K., Kim, H., . . . Kaang, B. K. (2008). Proc Natl Acad Sci U S A, 105(47), 18602-18607.]
'''2007'''
*[http://www.koreascience.or.kr/article/JAKO200709906195530.page Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases. Park, D.-U., Lee, J.-W., Yoon, G.-S., Gong, S.-S., & Bhak, J. (2007). Genomics & Informatics, 5(4), 196-199.]
*[https://www.ncbi.nlm.nih.gov/pubmed/17977885 CONSORF: a consensus prediction system for prokaryotic coding sequences. Kang, S., Yang, S. J., Kim, S., & Bhak, J. (2007). Bioinformatics, 23(22), 3088-3090.]
*[https://www.ncbi.nlm.nih.gov/pubmed/17646709 Genomic distribution of simple sequence repeats in Brassica rapa. Hong, C. P., Piao, Z. Y., Kang, T. W., Batley, J., Yang, T. J., Hur, Y. K., . . . Lim, Y. P. (2007). Mol Cells, 23(3), 349-356.]
*[https://www.ncbi.nlm.nih.gov/pubmed/18305828 GS2PATH: a web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data. Yang, J. O., Charny, P., Lee, B., Kim, S., Bhak, J., & Woo, H. G. (2007). Bioinformation, 2(5), 194-196.]
*[https://www.ncbi.nlm.nih.gov/pubmed/17057246 Impact of transcriptional properties on essentiality and evolutionary rate. Choi, J. K., Kim, S. C., Seo, J., Kim, S., & Bhak, J. (2007). Genetics, 175(1), 199-206.]
*[https://link.springer.com/chapter/10.1007/978-3-540-74477-1_59 Multi-resolution protein model.Kim, D.-S., Lee, B., Won, C.-I., Kim, D., Ryu, J., Cho, Y., . . . Bhak, J. (2007). Paper presented at the International Conference on Computational Science and Its Applications.]
'''2006'''
*[http://www.koreascience.or.kr/article/JAKO200634741684826.page BioCC: an openfree hypertext bio community cluster for biology. Gong, S.-S., Kim, T.-H., Oh, J.-S., Kwon, J.-K., Cho, S.-A., Bolser, D., & Bhak, J. (2006). Genomics & Informatics, 4(3), 125-128.]
*[https://www.ncbi.nlm.nih.gov/pubmed/15979829 Developmental rate and ploidy of embryos produced by nuclear transfer with different activation treatments in cattle. Bhak, J. S., Lee, S. L., Ock, S. A., Mohana Kumar, B., Choe, S. Y., & Rho, G. J. (2006). Anim Reprod Sci, 92(1-2), 37-49.]
*[https://www.ncbi.nlm.nih.gov/pubmed/16682823 Functional annotation and analysis of Korean patented biological sequences using bioinformatics. Lee, B. W., Kim, T. H., Kim, S. K., Kim, S. S., Ryu, G. C., & Bhak, J. (2006). Mol Cells, 21(2), 269-275.]
*[https://www.ncbi.nlm.nih.gov/pubmed/16845118 Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information. Lee, S., Lee, B., Jang, I., Kim, S., & Bhak, J. (2006). Nucleic Acids Res, 34(Web Server issue), W99-103.]
*[https://link.springer.com/article/10.1631/jzus.2006.A1492 Parameter selection of pocket extraction algorithm using interaction interface. Kim, C.-M., Won, C.-I., Ryu, J., Cho, C.-H., Bhak, J., & Kim, D.-S. (2006). Journal of Zhejiang University-Science A, 7(9), 1492-1499.]
*[https://www.ncbi.nlm.nih.gov/pubmed/16632644 Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Yang, T. J., Kim, J. S., Kwon, S. J., Lim, K. B., Choi, B. S., Kim, J. A., . . . Park, B. S. (2006). Plant Cell, 18(6), 1339-1347.]
'''2005'''
*[https://www.ncbi.nlm.nih.gov/pubmed/15613386 Architecture of basic building blocks in protein and domain structural interaction networks. Moon, H. S., Bhak, J., Lee, K. H., & Lee, D. (2005). Bioinformatics, 21(8), 1479-1486.]
*[https://www.koreamed.org/article/0117GNI/2005.3.2.52 BioCovi: A Visualization Service for Comparative Genomics Analysis. Lee, J., Park, D., & Bhak, J. (2005). Genomics Inform, 3(2), 52.]
*[http://www.koreascience.or.kr/article/JAKO200507921778146.page BioSubroutine: an Open Web Server for Bioinformatics Algorithms and Subroutines. Lee, J., Kim, H., Lee, W., Chung, D., & Bhak, J. (2005). Genomics & Informatics, 3(1), 35-38.]
*[https://www.ncbi.nlm.nih.gov/pubmed/15914543 Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). Park, D., Lee, S., Bolser, D., Schroeder, M., Lappe, M., Oh, D., & Bhak, J. (2005). Bioinformatics, 21(15), 3234-3240.]
*[https://link.springer.com/article/10.1007/BF03167441 Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis. Kim, D.-S., Cho, Y., Kim, D., Kim, S., Bhak, J., & Lee, S.-H. (2005). Japan Journal of Industrial and Applied Mathematics, 22(2), 251.]
*[http://www.koreascience.or.kr/article/JAKO200507921779715.page HExDB: Human EXon DataBase for Alternative Splicing Pattern Analysis and predicted human gene number. Park¹, J., Lee¹, M., Kim, T. H., & Bhak, J. (2005). Genomics & Informatics, 3(3), 112-117.]
*[https://www.ncbi.nlm.nih.gov/pubmed/16122378 A protein domain interaction interface database: InterPare. Gong, S., Park, C., Choi, H., Ko, J., Jang, I., Lee, J., . . . Bhak, J. (2005). BMC Bioinformatics, 6, 207.]
*[https://www.ncbi.nlm.nih.gov/pubmed/15749693 PSIbase: a database of Protein Structural Interactome map (PSIMAP). Gong, S., Yoon, G., Jang, I., Bolser, D., Dafas, P., Schroeder, M., . . . Bhak, J. (2005). Bioinformatics, 21(10), 2541-2543.]
'''2004'''
*[https://www.ncbi.nlm.nih.gov/pubmed/15610565 The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions. An, H. J., Lee, D., Lee, K. H., & Bhak, J. (2004). BMC genomics, 5(1), 97.]
*[http://www.koreascience.or.kr/article/JAKO200407921777370.page The Atom of Evolution. Bhak, J., Bolser, D., Park, D., Cho, Y., Yoo, K., Lee, S., . . . Huston, M. (2004). Genomics & Informatics, 2(4), 167-173.]
*[http://www.koreascience.or.kr/article/JAKO200407921776196.page High Correlation between Alu Elements and the Conversion of 3'UTR of mRNAs Processed Pseudogenes. An, H. J., Na, D., Lee, D., Lee, K. H., & Bhak, J. (2004). Genomics & Informatics, 2(2), 86-91.]
*[https://www.ncbi.nlm.nih.gov/pubmed/15117749 HPID: the Human Protein Interaction Database. Han, K., Park, B., Kim, H., Hong, J., & Park, J. (2004). Bioinformatics, 20(15), 2466-2470.]
*[https://www.ncbi.nlm.nih.gov/pubmed/14764552 Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP). Kim, W. K., Bolser, D. M., & Park, J. H. (2004). Bioinformatics, 20(7), 1138-1150.]
*[https://academic.oup.com/bioinformatics/article-abstract/20/10/1486/237030 Using convex hulls to extract interaction interfaces from known structures. Dafas, P., Bolser, D., Gomoluch, J., Park, J., & Schroeder, M. (2004). Bioinformatics, 20(10), 1486-1490.]
'''2003'''
*[http://www.koreascience.or.kr/article/JAKO200307921773980.page Biological network evolution hypothesis applied to protein structural interactome. Bolser, D. M., & Park, J. H. (2003). Genomics & Informatics, 1(1), 7-19.]
*[http://www.koreascience.or.kr/article/JAKO200307921773944.page Challenges and New Approaches in Genomics and Bioinformatics. Park, J. H., & Han, K. S. (2003). Genomics & Informatics, 1(1), 1-6.]
*[https://www.ncbi.nlm.nih.gov/pubmed/12625531 Different activation treatments for successful development of bovine oocytes following intracytoplasmic sperm injection. Ock, S. A., Bhak, J. S., Balasubramanian, S., Lee, H. J., Choe, S. Y., & Rho, G. J. (2003). Zygote, 11(1), 69-76.]
*[https://link.springer.com/chapter/10.1007/3-540-36175-8_16 Predicting protein interactions in human by homologous interactions in yeast.Kim, H., Park, J., & Han, K. (2003). Paper presented at the Pacific-Asia Conference on Knowledge Discovery and Data Mining.]
*[https://www.ncbi.nlm.nih.gov/pubmed/14531933 Visualisation and graph-theoretic analysis of a large-scale protein structural interactome. Bolser, D., Dafas, P., Harrington, R., Park, J., & Schroeder, M. (2003). BMC Bioinformatics, 4, 45.]
*[https://www.ncbi.nlm.nih.gov/pubmed/12538268 Visualization and analysis of protein interactions. Ju, B. H., Park, B., Park, J. H., & Han, K. (2003). Bioinformatics, 19(2), 317-318.]
'''2002'''
*[https://link.springer.com/chapter/10.1007/3-540-36151-0_35 InterViewer: Dynamic visualization of protein-protein interactions.Han, K., Ju, B.-H., & Park, J. H. (2002). Paper presented at the International Symposium on Graph Drawing.]
*[https://www.ncbi.nlm.nih.gov/pubmed/14571373 Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair. Kim, W. K., Park, J., & Suh, J. K. (2002). Genome Inform, 13, 42-50.]
*[https://www.jstage.jst.go.jp/article/gi1990/13/0/13_0_318/_article/-char/ja/ Protein Interactions in the Whole Human Genome. Han, K., Park, B., Kim, H., Kim, H.-J., & Park, J. (2002). Genome Informatics, 13, 318-319.]
*[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC139993/ Sequence similarity between stereocilin and otoancorin points to a unified mechanism for mechanotransduction in the mammalian inner ear. Jovine, L., Park, J., & Wassarman, P. M. (2002). BMC cell biology, 3(1), 28.]
'''2001'''
*[https://www.ncbi.nlm.nih.gov/pubmed/11791232 Conservation of protein interaction network in evolution. Park, J., & Bolser, D. (2001). Genome Inform, 12, 135-140.]
*[https://www.ncbi.nlm.nih.gov/pubmed/11125048 A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3. Dietmann, S., Park, J., Notredame, C., Heger, A., Lappe, M., & Holm, L. (2001). Nucleic Acids Res, 29(1), 55-57.]
*[https://www.ncbi.nlm.nih.gov/pubmed/11473004 Generating protein interaction maps from incomplete data: application to fold assignment. Lappe, M., Park, J., Niggemann, O., & Holm, L. (2001). Bioinformatics, 17 Suppl 1, S149-156.]
*[https://www.jstage.jst.go.jp/article/gi1990/12/0/12_0_480/_article/-char/ja/ An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server. Lee, J.-H., Koh, I. S., & Park, J. (2001). Genome Informatics, 12, 480-481.]
*[https://www.ncbi.nlm.nih.gov/pubmed/11273711 Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. Park, J., Lappe, M., & Teichmann, S. A. (2001). J Mol Biol, 307(3), 929-938.]
*[https://www.ncbi.nlm.nih.gov/pubmed/11292848 PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Qian, J., Stenger, B., Wilson, C. A., Lin, J., Jansen, R., Teichmann, S. A., . . . Gerstein, M. (2001). Nucleic Acids Res, 29(8), 1750-1764.]
*[https://www.jstage.jst.go.jp/article/gi1990/12/0/12_0_350/_article/-char/ja/ Protein classification comparison server. Park, J.-H., Ryu, S.-R., Kim, C., Koh, I. S., & Park, J. (2001). Genome Informatics, 12, 350-351.]
'''2000'''
*[https://www.ncbi.nlm.nih.gov/pubmed/10980157 DaliLite workbench for protein structure comparison. Holm, L., & Park, J. (2000). Bioinformatics, 16(6), 566-567.]
*[https://www.ncbi.nlm.nih.gov/pubmed/11159309 Estimating the significance of sequence order in protein secondary structure and prediction. Park, J., Dietmann, S., Heger, A., & Holm, L. (2000). Bioinformatics, 16(11), 978-987.]
*[https://www.ncbi.nlm.nih.gov/pubmed/10842732 Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL. Teichmann, S. A., Chothia, C., Church, G. M., & Park, J. (2000). Bioinformatics, 16(2), 117-124.]
*[https://www.ncbi.nlm.nih.gov/pubmed/10871268 RSDB: representative protein sequence databases have high information content. Park, J., Holm, L., Heger, A., & Chothia, C. (2000). Bioinformatics, 16(5), 458-464.]
*[https://www.ncbi.nlm.nih.gov/pubmed/10842730 Sequence search algorithm assessment and testing toolkit (SAT). Park, J., Holm, L., & Chothia, C. (2000). Bioinformatics, 16(2), 104-110.]
'''1998'''
*[https://www.ncbi.nlm.nih.gov/pubmed/9545446 DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins. Park, J., & Teichmann, S. A. (1998). Bioinformatics, 14(2), 144-150.]
*[https://www.sciencedirect.com/science/article/pii/S0022283698922215#FN1 Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. Park, J., Karplus, K., Barrett, C., Hughey, R., Haussler, D., Hubbard, T., & Chothia, C. (1998). Journal of molecular biology, 284(4), 1201-1210.]
*[https://www.ncbi.nlm.nih.gov/pubmed/9843945 Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements. Teichmann, S. A., Park, J., & Chothia, C. (1998). Proc Natl Acad Sci U S A, 95(25), 14658-14663.]
'''1997'''
*[https://www.ncbi.nlm.nih.gov/pubmed/9367767 Intermediate sequences increase the detection of homology between sequences. Park, J., Teichmann, S. A., Hubbard, T., & Chothia, C. (1997). J Mol Biol, 273(1), 349-354.]
'''1996'''
*[https://www.ncbi.nlm.nih.gov/pubmed/8772377 Protein structure prediction: playing the fold. Hubbard, T., Park, J., Lahm, A., Leplae, R., & Tramontano, A. (1996). Trends Biochem Sci, 21(8), 279-281.]
*[https://www.ncbi.nlm.nih.gov/pubmed/9079378 Update on protein structure prediction: results of the 1995 IRBM workshop. Hubbard, T., & Tramontano, A. (1996). Fold Des, 1(3), R55-63.]
'''1995'''
*[https://www.ncbi.nlm.nih.gov/pubmed/8710832 Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials. Hubbard, T. J., & Park, J. (1995). Proteins, 23(3), 398-402.]
